Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e16
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   3.6  
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos...    26   6.2  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   6.2  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   6.2  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    26   6.2  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   8.2  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   8.2  

>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 621 YINLVISSVY*TLSRLLTTPFFVNST 698
           YIN V   +  TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272


>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 206

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 877 NTSGHVRIYGKTFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKK 725
           +T G V + GK    +VDE+D  +T     L  LQ +       + + G+K
Sbjct: 94  STLGMVDLVGKNIL-IVDEVDDTRTTLHYALRELQRDVAEQAKKLNREGEK 143


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 535 RHGLH-LSKFKNAFASVSTTFVHHPI 461
           R GL   SKF  AFAS+S+ F+H+ +
Sbjct: 39  RSGLSKFSKFVYAFASISSGFLHYQL 64


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 85  LISLVEIYLVDVVHQHVVLMTNFFQRVEYL 174
           L+SL  +YLV    QH++     FQRV +L
Sbjct: 303 LVSLFILYLVRYTCQHLIKRYTKFQRVFFL 332


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 817 DSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKI 722
           D  K+ T +M+S   +NT+R WD  VK GK++
Sbjct: 59  DINKSST-LMVSGAADNTMRLWD--VKTGKQL 87


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 731 AIFYNCVPRSNRVILQVAQHHKRVRFKRI 817
           A+  + VPR  RVI QV+Q   R R K+I
Sbjct: 4   AVEKDAVPRKRRVISQVSQACIRCRQKKI 32


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 367 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 474
           Q+ +G  + +H ++DR++     ++ H +    DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,359
Number of Sequences: 5004
Number of extensions: 64231
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)