Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e16
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    31   1.6  
08_01_0205 - 1642769-1642783,1642923-1643555,1643656-1643737,164...    29   4.9  
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755     29   4.9  
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    28   8.6  

>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 429 GSCHNTVKYMVDIYGASVLILRTP 358
           G CHN VK +  IYG + L+L  P
Sbjct: 546 GDCHNAVKLLSKIYGRNPLLLLAP 569


>08_01_0205 -
           1642769-1642783,1642923-1643555,1643656-1643737,
           1644474-1644514
          Length = 256

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 316 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 474
           +C+  A QL GK+   S  ++  SV + + F ++ TR    +D   M + +GE
Sbjct: 196 ICSGIAAQLFGKKNELSNQESVASVTIPYSFPKLWTRVE--IDDAMMCKINGE 246


>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
          Length = 482

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 826 DEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKI 701
           +EI+ LK+D   + S LQNNT++     +   K++  L+EK+
Sbjct: 170 EEIERLKSDNAALSSELQNNTLKK----LNMEKRMQALEEKL 207


>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
            33817363-33817539,33817638-33817964,33818067-33818192,
            33818518-33818622,33818815-33820125,33820221-33820382,
            33820416-33820517,33820549-33821272,33821358-33821451,
            33821824-33821986
          Length = 1285

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 835  NVVDEIDSLKTDTFMML--SNLQNNTIRTWDAVVKNGKKISNLDEKI 701
            +V   +  +KTD   +L  +++QNNT+     V K+   ++N +E++
Sbjct: 941  HVFSAVLCMKTDLLFVLVHTSMQNNTLEVGKDVAKDTDNVANAEEQV 987


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,760,360
Number of Sequences: 37544
Number of extensions: 389486
Number of successful extensions: 999
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)