Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e16
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 147 EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 239
           E+  AR IFVAV+A   MN+TA+ T  ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214


>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +3

Query: 639 SSVY*TLSRLLTTPFFVNSTLIFSSRLDIFLPFFTTASHVR----IVLFCKLLNIINVSV 806
           S +Y  ++ ++  P F+  TLIF S L +F+ FF + SH+     ++L   LL++   S+
Sbjct: 13  SKIYEVINEIVY-PIFLTITLIFHSVLLVFIIFF-SPSHLNFLKFLLLTTSLLDVFATSI 70

Query: 807 L 809
           L
Sbjct: 71  L 71


>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 537 IDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLIL-RT 361
           ID   I+Q+  + L  F  ++ T+  K  KM+N  G   +  V  ++ +Y  S   L R 
Sbjct: 183 IDKKIIFQHTILKLTYFCGVMRTVNEKRSKMMNPGGQEIYPDV--ILQLYEKSKSTLHRI 240

Query: 360 PCSFADQLLSTFIANNYLC 304
            C   D+LL   + +   C
Sbjct: 241 CCQPLDKLLEWEVTDEEYC 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,877
Number of Sequences: 27780
Number of extensions: 374127
Number of successful extensions: 1038
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)