Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e13
(703 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P58374 Cluster: 60S ribosomal protein L30; n=20; Eukary... 109 6e-23
UniRef50_UPI0000E81F40 Cluster: PREDICTED: similar to ribosomal ... 108 1e-22
UniRef50_P62888 Cluster: 60S ribosomal protein L30; n=127; Eukar... 108 1e-22
UniRef50_Q8VZ19 Cluster: 60S ribosomal protein L30-2; n=34; Euka... 94 3e-18
UniRef50_P49153 Cluster: 60S ribosomal protein L30; n=15; Eukary... 85 1e-15
UniRef50_P14120 Cluster: 60S ribosomal protein L30; n=6; Eukaryo... 73 9e-12
UniRef50_Q9XG43 Cluster: 60S ribosomal protein L30; n=1; Guillar... 60 4e-08
UniRef50_A0BYD7 Cluster: Chromosome undetermined scaffold_137, w... 60 5e-08
UniRef50_A2DH05 Cluster: 60S ribosomal protein L30, putative; n=... 59 9e-08
UniRef50_Q7QQS4 Cluster: GLP_24_9208_8879; n=1; Giardia lamblia ... 56 6e-07
UniRef50_O27127 Cluster: 50S ribosomal protein L30e; n=4; Euryar... 55 1e-06
UniRef50_Q8U0M6 Cluster: 50S ribosomal protein L30e; n=3; Pyroco... 52 2e-05
UniRef50_Q8TXJ0 Cluster: 50S ribosomal protein L30e; n=6; Archae... 52 2e-05
UniRef50_A7Q291 Cluster: Chromosome chr13 scaffold_45, whole gen... 51 3e-05
UniRef50_Q980R3 Cluster: 50S ribosomal protein L30e; n=4; Sulfol... 50 6e-05
UniRef50_A4WNA1 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 49 1e-04
UniRef50_Q9YAU3 Cluster: 50S ribosomal protein L30e; n=1; Aeropy... 47 4e-04
UniRef50_A7I9N4 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 5e-04
UniRef50_Q8ZYQ6 Cluster: 50S ribosomal protein L30e; n=4; Thermo... 45 0.002
UniRef50_O28389 Cluster: 50S ribosomal protein L30e; n=1; Archae... 45 0.002
UniRef50_Q2FPJ8 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 0.003
UniRef50_Q00T87 Cluster: Chromosome 17 contig 1, DNA sequence; n... 42 0.011
UniRef50_Q8SRU1 Cluster: 60S RIBOSOMAL PROTEIN L30; n=1; Encepha... 42 0.015
UniRef50_Q8PUR3 Cluster: 50S ribosomal protein L30e; n=4; Methan... 41 0.026
UniRef50_P54061 Cluster: 50S ribosomal protein L30e; n=8; Archae... 41 0.034
UniRef50_A0B560 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.059
UniRef50_Q7XYC7 Cluster: Ribosomal protein L30; n=1; Triticum ae... 40 0.078
UniRef50_Q0W8G7 Cluster: 50S ribosomal protein L30E; n=1; uncult... 39 0.10
UniRef50_A4GI98 Cluster: Ribosomal protein L30e; n=1; uncultured... 39 0.14
UniRef50_A2SQE2 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.24
UniRef50_Q835U9 Cluster: Ribosomal protein L7A family; n=2; Lact... 35 1.7
UniRef50_Q97S58 Cluster: Ribosomal protein L7A family; n=43; Lac... 35 2.2
UniRef50_A3DE45 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 35 2.2
UniRef50_P62495 Cluster: Eukaryotic peptide chain release factor... 34 2.9
UniRef50_Q2RJM6 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 34 3.9
UniRef50_Q18BH0 Cluster: Putative ribosomal protein precursor; n... 34 3.9
UniRef50_Q190U6 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 6.8
UniRef50_A6W8L6 Cluster: Type III secretion exporter; n=1; Kineo... 33 6.8
UniRef50_Q41A26 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 9.0
UniRef50_Q3LWG3 Cluster: Ribosomal protein L30; n=1; Bigelowiell... 33 9.0
UniRef50_P55858 Cluster: 50S ribosomal protein L7Ae; n=44; Archa... 33 9.0
>UniRef50_P58374 Cluster: 60S ribosomal protein L30; n=20;
Eukaryota|Rep: 60S ribosomal protein L30 - Branchiostoma
belcheri (Amphioxus)
Length = 114
Score = 109 bits (262), Expect = 6e-23
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = -1
Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKY+RVCTLAITDPGDSDII
Sbjct: 53 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYFRVCTLAITDPGDSDII 102
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = -2
Query: 639 KKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
K+++KT+ESINSRL LVMKSGKY LG K+TLK LRQGKAKL+IIA N P LR
Sbjct: 2 KQKRKTMESINSRLQLVMKSGKYVLGLKETLKVLRQGKAKLIIIANNTPALR 53
>UniRef50_UPI0000E81F40 Cluster: PREDICTED: similar to ribosomal
protein L30; n=1; Gallus gallus|Rep: PREDICTED: similar
to ribosomal protein L30 - Gallus gallus
Length = 131
Score = 108 bits (260), Expect = 1e-22
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 72 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 121
>UniRef50_P62888 Cluster: 60S ribosomal protein L30; n=127;
Eukaryota|Rep: 60S ribosomal protein L30 - Homo sapiens
(Human)
Length = 115
Score = 108 bits (260), Expect = 1e-22
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 92.7 bits (220), Expect = 8e-18
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -2
Query: 651 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LR
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
>UniRef50_Q8VZ19 Cluster: 60S ribosomal protein L30-2; n=34;
Eukaryota|Rep: 60S ribosomal protein L30-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 112
Score = 93.9 bits (223), Expect = 3e-18
Identities = 39/50 (78%), Positives = 46/50 (92%)
Frame = -1
Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
R+SEIEYYA+LAK GVHHY+GNN++LGTACGKY+RV L+I DPGDSDII
Sbjct: 56 RRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDII 105
Score = 79.4 bits (187), Expect = 8e-14
Identities = 38/56 (67%), Positives = 43/56 (76%)
Frame = -2
Query: 651 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
MV KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLR 56
>UniRef50_P49153 Cluster: 60S ribosomal protein L30; n=15;
Eukaryota|Rep: 60S ribosomal protein L30 - Trypanosoma
brucei brucei
Length = 105
Score = 85.4 bits (202), Expect = 1e-15
Identities = 34/49 (69%), Positives = 43/49 (87%)
Frame = -1
Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDI 14
RK+EIEYY L+KT +HHYSGNN++LGTACG+++R C L+ITD GDSDI
Sbjct: 54 RKAEIEYYCTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSDI 102
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/53 (60%), Positives = 45/53 (84%)
Frame = -2
Query: 642 AKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
AKK K +++IN+++ LVMKSGKY LG +Q+LKTLRQG++KLV+I+ N PP+R
Sbjct: 2 AKKVKSKVDTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIR 54
>UniRef50_P14120 Cluster: 60S ribosomal protein L30; n=6;
Eukaryota|Rep: 60S ribosomal protein L30 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 105
Score = 72.5 bits (170), Expect = 9e-12
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -2
Query: 627 KTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
K+ ESIN +LALV+KSGKY LGYK T+K+LRQGK+KL+IIA N P LR
Sbjct: 5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLR 52
Score = 70.5 bits (165), Expect = 4e-11
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -1
Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 5
RKSE+EYYA+L+KT V+++ G N ELGTA GK +RV ++I + GDSDI+TT
Sbjct: 52 RKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTT 103
>UniRef50_Q9XG43 Cluster: 60S ribosomal protein L30; n=1; Guillardia
theta|Rep: 60S ribosomal protein L30 - Guillardia theta
(Cryptomonas phi)
Length = 107
Score = 60.5 bits (140), Expect = 4e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = -1
Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGD 23
RK E+EYYA+L K VHH+ GNN++LG +CGK Y L IT+ G+
Sbjct: 55 RKLELEYYAMLNKCHVHHFYGNNVDLGLSCGKSYGCSCLGITESGE 100
Score = 60.1 bits (139), Expect = 5e-08
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = -2
Query: 636 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
K K T E ++S+L +++K+GK+ GYK TLK LR GK K++II N PLR
Sbjct: 5 KNKSTSELLSSKLKIIIKTGKFSYGYKATLKNLRSGKCKMIIITDNCIPLR 55
>UniRef50_A0BYD7 Cluster: Chromosome undetermined scaffold_137,
whole genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_137,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 201
Score = 60.1 bits (139), Expect = 5e-08
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = -2
Query: 618 ESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
ES+N +L LV++SGK +GYKQTLK +R G AKLV I+ N P +R
Sbjct: 8 ESVNQKLQLVVRSGKITMGYKQTLKAIRNGTAKLVFISNNCPTIR 52
Score = 41.1 bits (92), Expect = 0.026
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = -1
Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
RK++IEYYA+LA+ + Y GNN++LGT G + I G SD I
Sbjct: 52 RKTQIEYYAMLAQITIVLYQGNNVDLGT--GVIWEAQLFLIEFMGMSDFI 99
>UniRef50_A2DH05 Cluster: 60S ribosomal protein L30, putative; n=5;
Eukaryota|Rep: 60S ribosomal protein L30, putative -
Trichomonas vaginalis G3
Length = 112
Score = 59.3 bits (137), Expect = 9e-08
Identities = 30/50 (60%), Positives = 35/50 (70%)
Frame = -2
Query: 639 KKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 490
KK + ESI + L+LV KSGKY LG QTLK+LR G+AKLVI A N P
Sbjct: 4 KKLSRARESIINSLSLVTKSGKYSLGISQTLKSLRNGEAKLVIFASNVAP 53
Score = 58.0 bits (134), Expect = 2e-07
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
+S IEYYA+L+ + + G+N++LGTACGKY+R ++I D G+S+I+
Sbjct: 56 RSLIEYYAMLSGCDILPFDGDNVDLGTACGKYFRSSVISIIDAGESEIL 104
>UniRef50_Q7QQS4 Cluster: GLP_24_9208_8879; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_24_9208_8879 - Giardia lamblia ATCC
50803
Length = 109
Score = 56.4 bits (130), Expect = 6e-07
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = -2
Query: 630 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 487
KK +SI+ L LV+KSGKY LG Q ++ +R GKA+LV +A N PPL
Sbjct: 8 KKAQDSISLTLTLVVKSGKYTLGTDQAIRNIRDGKAQLVFMANNCPPL 55
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/48 (37%), Positives = 32/48 (66%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDI 14
KS+++Y L+KT V ++G++ ELG A G+ + V + I + GD+D+
Sbjct: 57 KSQVDYLCHLSKTPVRVFAGSSRELGIAVGRQFNVSIMTILEAGDADL 104
>UniRef50_O27127 Cluster: 50S ribosomal protein L30e; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L30e -
Methanobacterium thermoautotrophicum
Length = 98
Score = 55.2 bits (127), Expect = 1e-06
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
K +IEYYA L++ V+ + G ++ELG+ CGK + V L I DPGDS I+
Sbjct: 46 KEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPGDSTIL 94
Score = 36.3 bits (80), Expect = 0.73
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = -2
Query: 612 INSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
I+ + + + +G LG K+T+++L+ GK KLV++A N P
Sbjct: 3 IDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIP 42
>UniRef50_Q8U0M6 Cluster: 50S ribosomal protein L30e; n=3;
Pyrococcus|Rep: 50S ribosomal protein L30e - Pyrococcus
furiosus
Length = 99
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
K +I YYA L+ V+ + G ++ELGT GK + V +LAI DPG+S I+
Sbjct: 46 KDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKIL 94
Score = 39.5 bits (88), Expect = 0.078
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2
Query: 600 LALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
L M++GK LG +T++ + G AKL+I+AKNAP
Sbjct: 7 LRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAP 42
>UniRef50_Q8TXJ0 Cluster: 50S ribosomal protein L30e; n=6;
Archaea|Rep: 50S ribosomal protein L30e - Methanopyrus
kandleri
Length = 109
Score = 51.6 bits (118), Expect = 2e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 5
+ +IEYYA LA V Y G +++LG CG+ + V ++A+ D G+SD+I T
Sbjct: 47 REDIEYYAELADVPVFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDLIAT 97
Score = 40.3 bits (90), Expect = 0.045
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = -2
Query: 621 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
++ I ++ + +++G LG QT+K L+ GK KLVI+A N P
Sbjct: 1 MQEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCP 43
>UniRef50_A7Q291 Cluster: Chromosome chr13 scaffold_45, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr13 scaffold_45, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 49
Score = 50.8 bits (116), Expect = 3e-05
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = -1
Query: 97 NNIELGTACGKYYRVCTLAITDPGDSDII 11
+N++LGTACGKY++V L+I DPGDSDII
Sbjct: 14 DNVDLGTACGKYFQVSCLSIVDPGDSDII 42
>UniRef50_Q980R3 Cluster: 50S ribosomal protein L30e; n=4;
Sulfolobaceae|Rep: 50S ribosomal protein L30e -
Sulfolobus solfataricus
Length = 108
Score = 50.0 bits (114), Expect = 6e-05
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -1
Query: 178 SILHFGRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
S L K +I +YA L+ V+ Y G+ +LGT CGK + + T++I D GDS I+
Sbjct: 47 STLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKIL 102
>UniRef50_A4WNA1 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=1; Pyrobaculum arsenaticum DSM 13514|Rep: Ribosomal
protein L7Ae/L30e/S12e/Gadd45 - Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321)
Length = 104
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
K +IEYYA LA + + G++IELG A + +++ LA+ DPG S+I+
Sbjct: 50 KDDIEYYAKLAGIPIFVFPGSSIELGAAAKRPHKIMALAVIDPGQSEIL 98
Score = 35.5 bits (78), Expect = 1.3
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 612 INSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
I L + + +G +G+++T + L G KLVIIA NAP
Sbjct: 7 IGRELQVAINTGSVVIGFEETRRALLAGTPKLVIIAANAP 46
>UniRef50_Q9YAU3 Cluster: 50S ribosomal protein L30e; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L30e - Aeropyrum
pernix
Length = 100
Score = 47.2 bits (107), Expect = 4e-04
Identities = 18/42 (42%), Positives = 31/42 (73%)
Frame = -2
Query: 615 SINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 490
S+ L ++K+G Y +G+KQ+LK ++ G+AK ++IA+N PP
Sbjct: 2 SVEKALKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPP 43
Score = 37.9 bits (84), Expect = 0.24
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
+ ++EYYA LA + Y G +++G G+ + V LA+ D G S I+
Sbjct: 46 RRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEGSSRIL 94
>UniRef50_A7I9N4 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=1; Candidatus Methanoregula boonei 6A8|Rep: Ribosomal
protein L7Ae/L30e/S12e/Gadd45 - Methanoregula boonei
(strain 6A8)
Length = 97
Score = 46.8 bits (106), Expect = 5e-04
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = -1
Query: 115 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIIT 8
+H + G+++ LG ACGK + V TLAI PG+SDI++
Sbjct: 57 IHTFEGSSVALGKACGKPFMVSTLAIVSPGESDILS 92
Score = 37.5 bits (83), Expect = 0.32
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -2
Query: 609 NSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
N+ L +K+G LG T K +++GKA++V+IA N P
Sbjct: 4 NASLRRAIKTGDVILGQNNTEKCIKEGKAQMVVIAANCP 42
>UniRef50_Q8ZYQ6 Cluster: 50S ribosomal protein L30e; n=4;
Thermoproteaceae|Rep: 50S ribosomal protein L30e -
Pyrobaculum aerophilum
Length = 102
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
+ +IEYYA LA + + G++IELG A + +++ LA+ D G S+I+
Sbjct: 47 RDDIEYYAKLAGVPIFVFPGSSIELGAAAKRPHKIMALAVIDAGQSEIL 95
Score = 37.9 bits (84), Expect = 0.24
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -2
Query: 612 INSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
I+ L + + +GK +G+++T K L G KL+I+A NAP
Sbjct: 4 ISRELQVAINTGKVVIGFEETKKALLTGAPKLIILAANAP 43
>UniRef50_O28389 Cluster: 50S ribosomal protein L30e; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L30e -
Archaeoglobus fulgidus
Length = 86
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = -2
Query: 612 INSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
+ + + V+K+G Y LG K TLK+LR G+AK VI+A N P
Sbjct: 4 VETIIKTVLKTGGYRLGSKSTLKSLRNGEAKAVIVASNCP 43
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 106 YSGNNIELGTACGKYYRVCTLAITD 32
Y+G N+ELG CGK + V +AIT+
Sbjct: 60 YNGTNMELGALCGKPFSVAAMAITE 84
>UniRef50_Q2FPJ8 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=1; Methanospirillum hungatei JF-1|Rep: Ribosomal
protein L7Ae/L30e/S12e/Gadd45 - Methanospirillum
hungatei (strain JF-1 / DSM 864)
Length = 95
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = -1
Query: 133 LLAKTGV--HHYSGNNIELGTACGKYYRVCTLAITDPGDSDIIT 8
L K GV + Y G+ ++LG ACGK + V LAI + GDSDI+T
Sbjct: 49 LSGKDGVKTYTYEGSGVQLGRACGKPFIVSALAIEESGDSDILT 92
Score = 39.1 bits (87), Expect = 0.10
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -2
Query: 609 NSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR*GY 475
N+ L +K+GK LG +T ++ +G AKLV++A N P GY
Sbjct: 4 NTSLRRAIKTGKVILGQNETKDSIEKGSAKLVVVAANCPAEFSGY 48
>UniRef50_Q00T87 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 170
Score = 42.3 bits (95), Expect = 0.011
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 506 AMITSFALPCRRVFKVCLYPKQYFPDFITKARRELIDSMVFF--CFFAATIL 655
A+ T+ P R+VF V LYP Y PD +T REL+ S FF CF A L
Sbjct: 114 AINTNLLAPLRKVFSVDLYPSVYRPDRMTIVSRELMPSAAFFEPCFGAIFFL 165
>UniRef50_Q8SRU1 Cluster: 60S RIBOSOMAL PROTEIN L30; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L30
- Encephalitozoon cuniculi
Length = 108
Score = 41.9 bits (94), Expect = 0.015
Identities = 16/42 (38%), Positives = 30/42 (71%)
Frame = -2
Query: 618 ESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
+++ S L L M++GKY +G+K+ +K++ KAK ++I+ N P
Sbjct: 9 DNVTSSLLLAMRTGKYIVGFKRAIKSVIMKKAKCLVISSNFP 50
Score = 33.5 bits (73), Expect = 5.1
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = -1
Query: 160 RKSEIEYYALLAK-TGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
++ +EYY++LA + +S NN ELG+ + +R+ ++I D G++++I
Sbjct: 53 KRKLLEYYSVLAGGLPIIFHSANNEELGSITERGHRLGCISIIDQGEAELI 103
>UniRef50_Q8PUR3 Cluster: 50S ribosomal protein L30e; n=4;
Methanosarcinaceae|Rep: 50S ribosomal protein L30e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 103
Score = 41.1 bits (92), Expect = 0.026
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -1
Query: 115 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
V Y G ++ELG CGK + + +AI D G+SDI+
Sbjct: 65 VLEYEGTSVELGPVCGKPFTIAAMAILDAGESDIL 99
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 615 SINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
+++ L +K+GK +G +T+ G AK+V++A N P
Sbjct: 11 NVDKSLIKAVKTGKVIIGANRTVDAAENGSAKMVVLASNCP 51
>UniRef50_P54061 Cluster: 50S ribosomal protein L30e; n=8;
Archaea|Rep: 50S ribosomal protein L30e - Methanococcus
jannaschii
Length = 110
Score = 40.7 bits (91), Expect = 0.034
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
+ +++YYA L+ V+ + ++ELG CGK + V L + D G S+I+
Sbjct: 52 EEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNIM 100
Score = 37.9 bits (84), Expect = 0.24
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -2
Query: 612 INSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
+N + + +GK LG K+T+K ++ G+ KLV++A N P
Sbjct: 9 VNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIP 48
>UniRef50_A0B560 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=1; Methanosaeta thermophila PT|Rep: Ribosomal protein
L7Ae/L30e/S12e/Gadd45 - Methanosaeta thermophila (strain
DSM 6194 / PT) (Methanothrixthermophila (strain DSM 6194
/ PT))
Length = 103
Score = 39.9 bits (89), Expect = 0.059
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -1
Query: 115 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
V+ Y + +LG ACGK + V LA+ +PGDS+I+
Sbjct: 57 VYAYQSSGRDLGAACGKPFPVAALAVIEPGDSEIM 91
>UniRef50_Q7XYC7 Cluster: Ribosomal protein L30; n=1; Triticum
aestivum|Rep: Ribosomal protein L30 - Triticum aestivum
(Wheat)
Length = 75
Score = 39.5 bits (88), Expect = 0.078
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -2
Query: 633 QKKTIESINSRLALVMKSGKYCLGYKQTLK 544
+++ +IN++L LVMKSGKY LGYK LK
Sbjct: 24 RRRARRNINNKLQLVMKSGKYTLGYKTVLK 53
>UniRef50_Q0W8G7 Cluster: 50S ribosomal protein L30E; n=1;
uncultured methanogenic archaeon RC-I|Rep: 50S ribosomal
protein L30E - Uncultured methanogenic archaeon RC-I
Length = 101
Score = 39.1 bits (87), Expect = 0.10
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -1
Query: 127 AKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
A ++ + G +++LG CGK Y V + + +PGDSDI+
Sbjct: 54 ANIPMYEFPGMSVDLGPICGKPYVVSAVTVLEPGDSDIM 92
Score = 38.7 bits (86), Expect = 0.14
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -2
Query: 612 INSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
++ L V+++GK +G KQ +K ++G AKLVI+A N P
Sbjct: 5 LDKSLRSVVRTGKVLIGTKQAVKASQRGVAKLVIVATNCP 44
>UniRef50_A4GI98 Cluster: Ribosomal protein L30e; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein L30e
- uncultured marine bacterium HF10_29C11
Length = 99
Score = 38.7 bits (86), Expect = 0.14
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -1
Query: 115 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
VH N ELG ACGK + + T+ + D GDSD++
Sbjct: 58 VHQAPVVNRELGVACGKPFSISTICVLDAGDSDLL 92
>UniRef50_A2SQE2 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=1; Methanocorpusculum labreanum Z|Rep: Ribosomal
protein L7Ae/L30e/S12e/Gadd45 - Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
Length = 96
Score = 37.9 bits (84), Expect = 0.24
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = -2
Query: 609 NSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
N L MK+G+ LG K + + KA+LVIIAKNAP
Sbjct: 4 NLSLRRAMKTGEVTLGQNSVEKIVAENKAELVIIAKNAP 42
Score = 34.3 bits (75), Expect = 2.9
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = -1
Query: 115 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIIT 8
++ + G++ +LG CG+ + + LAI + G+SDI++
Sbjct: 57 LYEFDGSSRQLGKECGRDHMISVLAIVNAGESDILS 92
>UniRef50_Q835U9 Cluster: Ribosomal protein L7A family; n=2;
Lactobacillales|Rep: Ribosomal protein L7A family -
Enterococcus faecalis (Streptococcus faecalis)
Length = 101
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -2
Query: 600 LALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNA 496
L L M++GK G + TLK +R KAK V +A++A
Sbjct: 11 LGLAMRAGKLVTGEELTLKDIRANKAKFVFVAQDA 45
>UniRef50_Q97S58 Cluster: Ribosomal protein L7A family; n=43;
Lactobacillales|Rep: Ribosomal protein L7A family -
Streptococcus pneumoniae
Length = 99
Score = 34.7 bits (76), Expect = 2.2
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = -2
Query: 618 ESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 490
+ I++ L L ++G+ G + +K ++ GKAKLV +A +A P
Sbjct: 4 QKISNLLGLAQRAGRIISGEELVVKAIQDGKAKLVFLAHDAGP 46
>UniRef50_A3DE45 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=3; Clostridiales|Rep: Ribosomal protein
L7Ae/L30e/S12e/Gadd45 - Clostridium thermocellum (strain
ATCC 27405 / DSM 1237)
Length = 117
Score = 34.7 bits (76), Expect = 2.2
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2
Query: 612 INSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNA 496
I S L L K+ K GY+ + L+ GKA+LVI+A++A
Sbjct: 6 IYSFLGLARKANKLAAGYESCERLLKAGKAELVIVAEDA 44
>UniRef50_P62495 Cluster: Eukaryotic peptide chain release factor
subunit 1; n=137; Eukaryota|Rep: Eukaryotic peptide
chain release factor subunit 1 - Homo sapiens (Human)
Length = 437
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 582 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>UniRef50_Q2RJM6 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=1; Moorella thermoacetica ATCC 39073|Rep: Ribosomal
protein L7Ae/L30e/S12e/Gadd45 - Moorella thermoacetica
(strain ATCC 39073)
Length = 102
Score = 33.9 bits (74), Expect = 3.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 621 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 490
+ +I S L L ++GK GY+ + LR K +LV++A++ P
Sbjct: 1 MNNIYSLLGLAYRAGKIVWGYQAVVAALRSQKVELVLLARDGSP 44
>UniRef50_Q18BH0 Cluster: Putative ribosomal protein precursor; n=1;
Clostridium difficile 630|Rep: Putative ribosomal
protein precursor - Clostridium difficile (strain 630)
Length = 103
Score = 33.9 bits (74), Expect = 3.9
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -2
Query: 630 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNA 496
K E + S L L ++GK G TL L++GK L++IA++A
Sbjct: 2 KNNKEKVLSFLGLATRAGKIVSGDDSTLLDLKKGKVNLILIAEDA 46
>UniRef50_Q190U6 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=2; Desulfitobacterium hafniense|Rep: Ribosomal protein
L7Ae/L30e/S12e/Gadd45 - Desulfitobacterium hafniense
(strain DCB-2)
Length = 98
Score = 33.1 bits (72), Expect = 6.8
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -2
Query: 621 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 493
+E I S L L ++GK G Q L++GK L+I+A++AP
Sbjct: 2 LERIYSLLGLARRAGKITSGESQIEVMLKKGKGFLLILAEDAP 44
>UniRef50_A6W8L6 Cluster: Type III secretion exporter; n=1;
Kineococcus radiotolerans SRS30216|Rep: Type III
secretion exporter - Kineococcus radiotolerans SRS30216
Length = 360
Score = 33.1 bits (72), Expect = 6.8
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 621 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNA 496
I ++ L L++ +G Y + Y++T+K LR K + + KNA
Sbjct: 187 IVAVTVLLGLIIAAGDYAMSYRRTMKKLRMSKQDIKMEHKNA 228
>UniRef50_Q41A26 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=1; Exiguobacterium sibiricum 255-15|Rep: Ribosomal
protein L7Ae/L30e/S12e/Gadd45 - Exiguobacterium
sibiricum 255-15
Length = 96
Score = 32.7 bits (71), Expect = 9.0
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -2
Query: 567 LGYKQTLKTLRQGKAKLVIIAKNA 496
+G KQTLK LR GKA VIIA +A
Sbjct: 27 VGQKQTLKALRSGKASEVIIADDA 50
>UniRef50_Q3LWG3 Cluster: Ribosomal protein L30; n=1; Bigelowiella
natans|Rep: Ribosomal protein L30 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 102
Score = 32.7 bits (71), Expect = 9.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 157 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 38
K I +Y LL K +SGN+ ELG C ++ C L I
Sbjct: 60 KLHIFHYCLLYKVKFCFFSGNSKELGQLCDLKHKACILGI 99
>UniRef50_P55858 Cluster: 50S ribosomal protein L7Ae; n=44;
Archaea|Rep: 50S ribosomal protein L7Ae - Sulfolobus
solfataricus
Length = 127
Score = 32.7 bits (71), Expect = 9.0
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -2
Query: 585 KSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 490
+SGK G +T K + +G+AKLVIIA++ P
Sbjct: 28 ESGKIKKGTNETTKAVERGQAKLVIIAEDVQP 59
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,844,695
Number of Sequences: 1657284
Number of extensions: 13092744
Number of successful extensions: 26530
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 25799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26526
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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