Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e13
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   100   1e-21
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.46 
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical ...    30   1.8  
AB071420-1|BAB86940.1|  401|Caenorhabditis elegans 2-amino-3-car...    30   1.8  
Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/50 (86%), Positives = 48/50 (96%)
 Frame = -1

Query: 160 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 11
           RKSEIEYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII
Sbjct: 56  RKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDII 105



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 38/56 (67%), Positives = 45/56 (80%)
 Frame = -2

Query: 651 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 484
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLR
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLR 56


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -2

Query: 594 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 499
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 678 GFISIYAPKMVAAKKQKKTIESINSRLALV 589
           GF +I  P  V AKK   ++E+IN+R  L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167


>AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3b protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
 Frame = +3

Query: 351 LSSI*PYFCELFY*---TTK--GIHTSLSVRLHMHPFDKY-WE 461
           LS+I P FCE F     TTK  GI   LSV L +HP+D + W+
Sbjct: 200 LSTIMPGFCEFFENWGLTTKTPGICEELSVVLFVHPWDMHMWD 242


>AB071420-1|BAB86940.1|  401|Caenorhabditis elegans
           2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
           protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
 Frame = +3

Query: 351 LSSI*PYFCELFY*---TTK--GIHTSLSVRLHMHPFDKY-WE 461
           LS+I P FCE F     TTK  GI   LSV L +HP+D + W+
Sbjct: 200 LSTIMPGFCEFFENWGLTTKTPGICEELSVVLFVHPWDMHMWD 242


>Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical
           protein K07A12.1 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 221 CWITMWGTYGVVFKLD 174
           CW T W T  ++FKLD
Sbjct: 244 CWETAWNTAKMIFKLD 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,142
Number of Sequences: 27780
Number of extensions: 332346
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)