Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e11
         (372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    26   0.14 
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   4.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   4.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   9.4  

>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 50  CNSRKPNEGRRRNRFVPSLLSDVWN 124
           C+SR+    RR  R+V +   DVWN
Sbjct: 67  CDSRQVANARRIARYVQTKHPDVWN 91


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 185 QEPFIDKPPKLQNTLLLTARHSTHPTV 105
           Q PFID P  +  TLL +     +P +
Sbjct: 292 QSPFIDGPVFVILTLLYSLNSCVNPWI 318


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = +1

Query: 169 SMNGSWIFCMCEVYPGGVCNPSFCVCV*YRLKN 267
           S  GSW      +YP          C    LKN
Sbjct: 230 SQYGSWFLPHQPIYPAVTATVQLSTCTRTTLKN 262


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -2

Query: 158 KLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVS 39
           KLQ+  LL+ RH     +    S    C     +C  +V+
Sbjct: 471 KLQSFPLLSQRHQIDAKMFCNESSVSNCENEYCECTHVVN 510


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,814
Number of Sequences: 336
Number of extensions: 1691
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)