Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e10
         (874 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   5.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.5  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    22   5.5  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    21   9.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 868 CR*VYKNETCQMQQSSNGHRNCK 800
           C+  +K +TC ++ S   H  CK
Sbjct: 132 CKNGWKGKTCSLKDSHCDHTTCK 154


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 436 SVDGAQQHPLVFCKQNG 486
           +VDG Q+HPL     NG
Sbjct: 146 NVDGCQKHPLCNDDPNG 162


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 457 HPLVFCKQNGFSGNACVISFSDHKL 531
           HP V     G+SG+ C   F+   +
Sbjct: 119 HPQVLLSPGGYSGSLCDQGFAQQPM 143


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 125 RFLPTNCDRQ 96
           RFLP NCD++
Sbjct: 111 RFLPENCDKR 120


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 561 PLVTNFTNKMEFVVTETNDTSIPGEPILFTE 469
           P++  +T +   +V     T  PG P  F E
Sbjct: 300 PMIFGYTTREGMIVEMMRKTETPGMPNDFEE 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,692
Number of Sequences: 336
Number of extensions: 4102
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)