Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e09
(185 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 46 9e-07
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 0.75
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 24 2.3
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 3.0
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 24 3.0
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 23 4.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 23 4.0
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 23 5.3
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 23 7.0
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 23 7.0
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 23 7.0
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 22 9.3
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc... 22 9.3
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 22 9.3
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 45.6 bits (103), Expect = 9e-07
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = -1
Query: 179 LFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIA 66
L++TI L F F QAYEY A FTI+D +YG++F+ A
Sbjct: 175 LYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFA 212
Score = 31.1 bits (67), Expect = 0.020
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 64 SGFHGIHVIIGTLFLLI 14
+G HGIH+I+GT+ LL+
Sbjct: 213 TGLHGIHIIVGTILLLV 229
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 0.75
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = -1
Query: 104 IADRIYGSTFFIAIRISWNSCNNWNFISINLLY 6
+ D + S + A ++ ++S +NW+ ++ L+Y
Sbjct: 1197 VGDECFESKNYEAAKLMYSSISNWSMLATTLVY 1229
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 176 FLTILLGFYFTILQAYEYIEASFTI-ADRIYGSTFFIAIR 60
F IL+ YF I + Y ++A +TI + Y T+ I +R
Sbjct: 419 FAGILIADYFVIRKGYLKVDALYTINPNEPYWFTYGINLR 458
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 23.8 bits (49), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = -1
Query: 161 LGFYFTILQAYEYIE----ASFTIADRIYG 84
L YF+ L +YE +E S T+ D +YG
Sbjct: 131 LTIYFSTLLSYEKVENLIKKSLTVIDSLYG 160
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 23.8 bits (49), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 131 YEYIEASFTIADRIYGSTFFIAIRI 57
+EY + + + D I G +FI +RI
Sbjct: 174 FEYSKNKYHLKDVIIGKIYFILVRI 198
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 23.4 bits (48), Expect = 4.0
Identities = 5/17 (29%), Positives = 11/17 (64%)
Frame = -1
Query: 53 WNSCNNWNFISINLLYS 3
W+ C W + S+N +++
Sbjct: 253 WHKCKKWAYYSLNRIFT 269
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 23.4 bits (48), Expect = 4.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -1
Query: 152 YFTILQAYEYIEASFTIADRIY 87
YFT+ + + +SF + D++Y
Sbjct: 82 YFTVKPSEGIVSSSFKVGDKVY 103
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 155 FYFTILQAYEYIEAS 111
FYF +LQ EYI+A+
Sbjct: 234 FYFMMLQKGEYIDAT 248
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 22.6 bits (46), Expect = 7.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 109 LQLLIEFMDP 80
L+LLIEFMDP
Sbjct: 579 LRLLIEFMDP 588
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 22.6 bits (46), Expect = 7.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 179 LFLTILLGFYFTILQAYEYIE 117
L L +L+ FT++ Y+YIE
Sbjct: 61 LLLLLLIPALFTLIWIYKYIE 81
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 22.6 bits (46), Expect = 7.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 69 YEKSGSINSISNCKRSFYIF 128
Y+K NS+S+C R+ ++F
Sbjct: 214 YKKIEPSNSLSSCLRNSFVF 233
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 22.2 bits (45), Expect = 9.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 134 AYEYIEASFTIADRIYGSTFF 72
A ++ E S IAD I STFF
Sbjct: 421 ATQFSEESEDIADSITSSTFF 441
>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 22.2 bits (45), Expect = 9.3
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = -1
Query: 71 IAIRISWNSCNNWNFISI 18
I ++ ++C NW F+S+
Sbjct: 18 IVVKELLDACKNWGFVSL 35
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 63 DCYEKSGSINSISNCKRSFYIFICL 137
DC E + ++ NCK S IF+ L
Sbjct: 99 DCKEFERAAYTLQNCKSSKSIFLRL 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,780
Number of Sequences: 5004
Number of extensions: 9989
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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