Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e09
         (185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949...    26   4.9  
02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630...    26   4.9  
11_06_0669 - 26084906-26087350                                         25   8.5  

>10_06_0006 -
           9496990-9497592,9497695-9497802,9497884-9497997,
           9498170-9498219,9498346-9498434,9498542-9498738,
           9498877-9499038,9499337-9499455,9499579-9499666,
           9499744-9499849,9499968-9500056,9500167-9500319,
           9500434-9500526,9500625-9500691,9500811-9500923,
           9501544-9501639,9501782-9501961
          Length = 808

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 4   EYSKLIEIKFQLLHEFHEILIAMKKV 81
           EY  L + K+  L E H +L++M+K+
Sbjct: 327 EYGNLRQPKYGHLKELHSVLMSMEKI 352


>02_05_1121 +
           34262019-34262040,34262144-34262211,34262909-34263067,
           34263146-34263313,34264125-34264278,34264845-34264924,
           34265567-34265839,34265956-34266099,34266750-34266884,
           34266994-34267092,34267530-34267586,34267673-34267877,
           34268159-34268277,34268779-34268877,34268964-34269203
          Length = 673

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 109 LQLLIEFMDPLFS*QSGFHGIHVIIGTLFLLICYIR 2
           +Q  ++ MD LFS ++ +H  H +  T+F  I  +R
Sbjct: 69  IQRTLDVMDHLFSCEATWHKGHTLAQTVFTCIYLMR 104


>11_06_0669 - 26084906-26087350
          Length = 814

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 77  FFIAIRISWNSCNNWNFISINL 12
           FFI +R  W   ++WNF+  NL
Sbjct: 707 FFIHLRSLWLWKSSWNFLPDNL 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,396
Number of Sequences: 37544
Number of extensions: 45477
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)