Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e09
         (185 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18780| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.60 
SB_30621| Best HMM Match : SH3_2 (HMM E-Value=0.23)                    27   1.8  
SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_1086| Best HMM Match : NCD3G (HMM E-Value=7.3)                      27   2.4  
SB_58393| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  

>SB_18780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 143 ILQAYEYIEASFTIADRIYGSTFFIAIRISWNSCN 39
           I  +YEY+E  F++  R  GS  FI I+ S NSC+
Sbjct: 61  ITSSYEYLEKRFSLVIRSIGSALFI-IQTS-NSCS 93


>SB_30621| Best HMM Match : SH3_2 (HMM E-Value=0.23)
          Length = 391

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 51  P*NPD--CYEKSGSINSISNCKRSFYIFICL 137
           P NPD  C EK   I  I  CKR  ++  CL
Sbjct: 221 PKNPDELCLEKGQHIRDIRECKRRGWMKYCL 251


>SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 RLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFI 69
           R+FL IL+ F    L  + Y  A+FT   ++   T FI
Sbjct: 250 RMFLDILIAFIIPYLLWFAYTIANFTFKPKLSFETEFI 287


>SB_1086| Best HMM Match : NCD3G (HMM E-Value=7.3)
          Length = 145

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 28  KFQLLHEFHEILIAMKKVD 84
           K Q++H+F E L+++ KVD
Sbjct: 56  KLQMVHDFQEFLVSLVKVD 74


>SB_58393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 10 SKLIEIKFQLLHEFHEILIAMKKVD 84
          S ++  K Q++H+F EIL+   KVD
Sbjct: 18 SNIVMRKRQMVHDFPEILVYPVKVD 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,221,517
Number of Sequences: 59808
Number of extensions: 53952
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 16,821,457
effective HSP length: 40
effective length of database: 14,429,137
effective search space used: 303011877
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)