Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e09
(185 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 26 0.047
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 24 0.14
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 21 1.0
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 1.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 1.0
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 21 1.3
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 21 1.3
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 1.8
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 1.8
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 1.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 19 7.2
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 25.8 bits (54), Expect = 0.047
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 125 YIEASFTIADRIYGSTFFIAIRISWNSCNNW 33
++E SFT D+ ++ +++N+ NNW
Sbjct: 42 WVEESFTNFDKGINWRSYVVCDVAYNNVNNW 72
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 24.2 bits (50), Expect = 0.14
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Frame = -1
Query: 77 FFIAIR--ISWNSCNN-WN 30
FF+++R + W SCNN WN
Sbjct: 88 FFMSMRSELPWGSCNNYWN 106
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 21.4 bits (43), Expect = 1.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 143 ILQAYEYIEASFTIADRIYGST 78
+LQA EYIE A+ Y ST
Sbjct: 6 LLQAAEYIERREREAEHGYAST 27
Score = 19.4 bits (38), Expect = 4.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 67 QSGFHGIHVIIG 32
Q+G HG+H + G
Sbjct: 131 QTGLHGLHGLHG 142
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 1.0
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 161 LGFYFTILQAYEYIEASFTIADRIYGSTFFIAIRISWNSCNN-WN 30
+G+ +L + I +A ++ + I + W +C N WN
Sbjct: 100 IGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPWRTCGNPWN 144
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 1.0
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 161 LGFYFTILQAYEYIEASFTIADRIYGSTFFIAIRISWNSCNN-WN 30
+G+ +L + I +A ++ + I + W +C N WN
Sbjct: 153 IGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPWRTCGNPWN 197
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 1.3
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 107 TIADRIYGSTFFIAIRISWNSCNNWNFISIN 15
T+A +++G+ + I + N C++ F+ N
Sbjct: 152 TVAKKLHGTDIEMRILKTKNECDHVQFLITN 182
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 1.3
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 107 TIADRIYGSTFFIAIRISWNSCNNWNFISIN 15
T+A +++G+ + I + N C++ F+ N
Sbjct: 152 TVAKKLHGTDIEMRILKTKNECDHVQFLITN 182
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 1.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Frame = -1
Query: 71 IAIRISWNSCNNW 33
+++ SWN N+W
Sbjct: 690 VSVNKSWNKWNDW 702
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 1.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Frame = -1
Query: 71 IAIRISWNSCNNW 33
+++ SWN N+W
Sbjct: 690 VSVNKSWNKWNDW 702
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 1.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Frame = -1
Query: 71 IAIRISWNSCNNW 33
+++ SWN N+W
Sbjct: 690 VSVNKSWNKWNDW 702
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 18.6 bits (36), Expect = 7.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 89 YGSTFFIAIRISWNSCNNWNFISIN 15
+GS F ++S NN NF+ ++
Sbjct: 169 FGSWTFNGDQVSLALYNNKNFVDLS 193
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,572
Number of Sequences: 438
Number of extensions: 665
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used: 2567700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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