Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e08
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   31   0.88 
SB_27542| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        30   2.7  
SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)                     30   2.7  
SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)                      29   3.5  
SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)                 29   4.7  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          28   8.2  
SB_34836| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)                   28   8.2  
SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)                       28   8.2  
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     28   8.2  
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)                   28   8.2  

>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 385  CKCCCCSNYWCVPADWCTASAKTCRPTKMLKKQNCS*DCQSNARPPWPRKLSGRAAYCLS 564
            C   CC+ + C+    C    + C+  K+  K +C      N RPPW  +  G+  Y  S
Sbjct: 865  CGNGCCAQHKCLNGGTCV---ERCKDPKL--KFSC------NCRPPWSGRFCGKRVYS-S 912

Query: 565  C*YAHASA 588
            C   HA A
Sbjct: 913  CWEKHAFA 920


>SB_27542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
 Frame = -1

Query: 619 YENDLLKMNIELMH-AHINKINNMLHDL-IVSVAKVDERLIGNLMNNSVSSTFLSDDTFL 446
           Y+N   K + E  H A++++  NM  +   + + + ++ L   L+ NS      S +  +
Sbjct: 64  YQNPAYKED-EYQHPAYMSEFRNMSKNANFLYLVQTEQCLPQKLLENSYMGNTTSCNCEV 122

Query: 445 LM-----PCT-NPPAHTSNCYNNSI-YKEGRWVANTDSSQCIDFSNYKELAIDDDVEFW 290
           L+      C  N   H S   N SI +  GR +     SQ +D      + +DDDVEFW
Sbjct: 123 LVLSYKQRCNRNSSGHISYTLNTSISWTVGRNILYR-LSQALDMQYLYYIFLDDDVEFW 180


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 634 QEELMYENDLLKMNIELMHAHINKINNMLHDLIVSVAKVDE 512
           QEE  +  ++L +   L+H H  +I+++L  L  S A+VD+
Sbjct: 210 QEETKFRREVLAVKDRLIHQHRTEIDDLLSQLERSNAEVDK 250


>SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)
          Length = 409

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
 Frame = -1

Query: 619 YENDLLKMNIELMH-AHINKINNMLHDL-IVSVAKVDERLIGNLMNNSVSSTFLSDDTFL 446
           Y+N   K + E  H A++++  NM  +   + + + ++ L   L+ NS      S +  +
Sbjct: 205 YQNPAYKED-EYQHPAYMSEFRNMSKNANFLYLVQTEQCLPQKLLENSYMGNTTSCNCEV 263

Query: 445 LM-----PCT-NPPAHTSNCYNNSI-YKEGRWVANTDSSQCIDFSNYKELAIDDDVEFW 290
           L+      C  N   H S   N SI +  GR +     SQ +D      + +DDDVEFW
Sbjct: 264 LVLSYKQRCNRNSSGHISYTLNTSISWTVGRNILYR-LSQALDKQYLYYIFLDDDVEFW 321


>SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)
          Length = 187

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 157 LNDITSMAEGELAAKLTSFMFGHVATFVIVFIVILFLYCMVRNRNSRQY 11
           L D+T          L  ++ G +A   +V  V L +Y  VRNR  RQY
Sbjct: 11  LKDVTDAVNKGDWGNLGKYIIGLLALISVVLFV-LAIYVCVRNRRQRQY 58


>SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)
          Length = 337

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 448 LLMPCTNPPAHTSNCYNNSIYKEGRWVANTDSS 350
           LL+P  +P    SN YNN I K G W+ + D++
Sbjct: 167 LLLPRRSPDPK-SNQYNNDIAKYGEWLWDVDAN 198


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  YKNKITINTITKVAT*PNMNEVNLAANSPSAMEVMSFRLVPTPP 176
           +K K+ ++ IT   +    +++  AA+SPSA +V      PTPP
Sbjct: 401 HKKKMRLDQITDKLSAQCKSQIEAAASSPSAFQVAKPH-TPTPP 443


>SB_34836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
 Frame = -1

Query: 589 ELMH-AHINKINNMLHDL-IVSVAKVDERLIGNLMNNSVSSTFLSDDTFLLM-----PCT 431
           E  H A++++  NM  +   + + + ++ L   L+ NS      S +  +L+      C 
Sbjct: 25  EYQHPAYMSEFRNMSRNANFLYLVQTEQCLPQKLLENSYMGNTTSCNCEVLVLSYKQRCN 84

Query: 430 -NPPAHTSNCYNNSI-YKEGRWVANTDSSQCIDFSNYKELAIDDDVEFW 290
            N   H S   N SI +  GR +     SQ +D      + +DDDVEFW
Sbjct: 85  RNSSGHISYTLNTSISWTVGRNILYR-LSQALDKQYLYYIFLDDDVEFW 132


>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
          Length = 1130

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 CCSNYWCVPADW-CTASAKTCRPTKML 474
           C SN  C+P    CT    TC PT +L
Sbjct: 336 CPSNLTCIPVGTSCTIPVNTCSPTNVL 362


>SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)
          Length = 270

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 112 LTSFMFGHVATFVIVFIVILFLY 44
           LT+  FGH   F ++ I+I+F Y
Sbjct: 209 LTTIFFGHWQFFCVIIIIIMFTY 231


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 693 LWRQVGGRFLTWCSTLRLMHLL 758
           LWR   G +L W S +R  HLL
Sbjct: 551 LWRNTKGSYLLWLSDVRPSHLL 572


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 676  TEGDTATKGDLMHIQEELMYENDLLKMNIELMHAHINKINNMLHD 542
            TE +T T  DL   QEEL+YE +  +  I+++   I ++ ++ HD
Sbjct: 1557 TEKETMT--DLT--QEELLYEAESSRNEIQVLRNKIERLEHLSHD 1597


>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
          Length = 506

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 268 TYHDSWKDASGWSFIAQQKSNLITTMENT 182
           T    W D  GW  I Q++ +L++T+E +
Sbjct: 143 TQESDWIDEVGWEKIRQKREDLLSTVETS 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,397,158
Number of Sequences: 59808
Number of extensions: 563457
Number of successful extensions: 1755
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)