Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e07
         (836 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7LAW9 Cluster: Putative uncharacterized protein; n=2; ...    36   1.7  
UniRef50_Q86K87 Cluster: Similar to Dictyostelium discoideum (Sl...    34   3.8  
UniRef50_A5DR55 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_A4QUN2 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  

>UniRef50_A7LAW9 Cluster: Putative uncharacterized protein; n=2;
           Brachyspira|Rep: Putative uncharacterized protein -
           Brachyspira pilosicoli
          Length = 397

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +1

Query: 430 IKYIRSKYNIDKLKNRCMNTRISLVHFT 513
           IK+I +KY I+KLKN+C N ++ L  FT
Sbjct: 160 IKFIANKYYINKLKNKCSNIQLYLNDFT 187


>UniRef50_Q86K87 Cluster: Similar to Dictyostelium discoideum (Slime
           mold). DG2033 protein; n=2; Dictyostelium
           discoideum|Rep: Similar to Dictyostelium discoideum
           (Slime mold). DG2033 protein - Dictyostelium discoideum
           (Slime mold)
          Length = 682

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +3

Query: 165 QLKSKFKKNYAYL*HLQRIESVLLLSIIQPIYLLDIQNLKPKINGKSSCITFCYS*IIQV 344
           Q+ + FK+ +  L  +  +  + L ++IQP++L    ++       SS I  CY    + 
Sbjct: 141 QVPASFKEQFTVL-SIPHLIFITLNTLIQPLFLYFFFSIPLNKFSLSSIIEVCYQDFSET 199

Query: 345 FSLAFCFVKTKLFYTSWLL-YLGLFNINVNQIYS 443
             +A C ++  LF+  ++L  +GL    + +IYS
Sbjct: 200 IPVAKCELEYNLFFYLFVLSCIGLVCSGLFRIYS 233


>UniRef50_A5DR55 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 686

 Score = 33.5 bits (73), Expect = 6.7
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 157 NKIN*RANLKKITRIYNIYNESSQYYY-CL*FSLFIYWTFKT*NQRLMENH 306
           ++++ R  L+K+T IYN   ESS  YY C   S+F+ +T     Q+  E H
Sbjct: 579 DQVSLRNILRKVTEIYNSGFESSTVYYSCFKASMFMKYTLDYVEQKFPELH 629


>UniRef50_A4QUN2 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 1512

 Score = 33.5 bits (73), Expect = 6.7
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 675 WFSDLANRFILESITRLLCPTNYVINNE 758
           WFS LA  FIL     L+CPT YV   E
Sbjct: 820 WFSCLAAAFILVVFPMLVCPTQYVFTGE 847


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,200,526
Number of Sequences: 1657284
Number of extensions: 13481675
Number of successful extensions: 25744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25738
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)