Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e07
         (836 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.74 
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    25   0.74 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   3.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.1  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 542 NYVYGSLVPIVK*TKLILVFIHLFFSLSMLYLL 444
           N++YGS+   V  T  I  F+  FF++S+  +L
Sbjct: 49  NFIYGSMNMTVAITDKIANFMLTFFNVSLRIIL 81


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +1

Query: 397 YYTLVFSISMLIKYIRSKYNIDKLKNRCMNTRISLVHFTIGTRDPYT*LHVFQIINWFLI 576
           Y+TL ++   +++ +   Y  DK++ +    + S+      + DP   L +  +I+ +LI
Sbjct: 268 YFTLQWAFLQILEILALAYLCDKVQLKIGEIKYSVNKLIFRSNDPKVTLELCGMISTYLI 327


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 354 AFCFVKTKLFYTSWLLYLGLF 416
           A CF+ + +  T W++Y+ ++
Sbjct: 46  AICFLLSTILGTCWIIYVRIY 66


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 72  VSACAESHTSLFWCLYSS 19
           VS+C +  +S  WC YS+
Sbjct: 135 VSSCHQGFSSSTWCNYSA 152


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 9   IYIMNCTNTKTNLYGSRH 62
           +Y +N T T+TNL   RH
Sbjct: 365 VYQVNPTKTRTNLPTHRH 382


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 355 HSVSLRQNFSIPLGYYTLVFSISMLI 432
           H+V + +N S+P   Y ++  I  +I
Sbjct: 637 HTVKINENISMPYIGYQIILMIGTVI 662


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 522 GSYSKMNQANSCIHTPIF*FVYVVFTTNIFD 430
           GSYS     +   H+P+F  V  V  T+ F+
Sbjct: 56  GSYSSNKNVSRADHSPVFGKVEPVPHTSSFN 86


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 572 SYNSLKWELN-P*MKSNKF*YFVFVLHARLFNLPNVVFRF 688
           S+NSL +EL+    ++ K   ++   H R+  +PN +FRF
Sbjct: 280 SHNSL-YELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRF 318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,529
Number of Sequences: 336
Number of extensions: 3950
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)