Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e07
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   4.4  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   5.8  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 427 LIKYIRS-KYNIDKLKNRCMNTRISLVHFTIGTRDP 531
           +++Y+R+ K+++   K R ++T +   HF +   DP
Sbjct: 638 ILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDP 673


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 603 LE*NLINSNILYSFFTLGYLIYQTWFSDLANRFILES 713
           L+ N INS I+ S  T+ + +YQ++F  +    I+ S
Sbjct: 305 LDGNSINSEIIASQSTVPFPVYQSFFDKVETEQIVNS 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,028
Number of Sequences: 5004
Number of extensions: 64509
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)