Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e07
         (836 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061058-1|AAL28606.1|  516|Drosophila melanogaster LD02646p pro...    31   2.6  
AE013599-648|AAF59092.1|  516|Drosophila melanogaster CG2110-PA ...    31   2.6  

>AY061058-1|AAL28606.1|  516|Drosophila melanogaster LD02646p
           protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -2

Query: 637 YKILEFIRFHSRVQFP--LQAII*GTSLLFETHVIMYMDPW 521
           ++ L F+++H  +  P  +Q I+  +SLL++ H+  ++ PW
Sbjct: 73  FRSLVFLQYHMMLSDPAEIQNILSSSSLLYKEHLYSFLRPW 113


>AE013599-648|AAF59092.1|  516|Drosophila melanogaster CG2110-PA
           protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -2

Query: 637 YKILEFIRFHSRVQFP--LQAII*GTSLLFETHVIMYMDPW 521
           ++ L F+++H  +  P  +Q I+  +SLL++ H+  ++ PW
Sbjct: 73  FRSLVFLQYHMMLSDPAEIQNILSSSSLLYKEHLYSFLRPW 113


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,600,084
Number of Sequences: 53049
Number of extensions: 576663
Number of successful extensions: 930
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)