Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e07
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine r...    29   4.1  
Z47745-5|CAN99724.1|   68|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z83231-6|CAI46597.1|  373|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AL032647-8|CAI46617.1|  373|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 62 protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -1

Query: 551 NTCNYVYGSLVPI-VK*TKLILVFIHLFFSLSMLYLLRIYLINI--DIEKTK 405
           N+ N  +  L P  VK    +LVF    F+LS+ Y+L +Y +N+  D+ K K
Sbjct: 251 NSLNSFFHFLPPFFVKLNTNLLVFASDMFTLSLPYILLVYDVNVRSDVFKKK 302


>Z47745-5|CAN99724.1|   68|Caenorhabditis elegans Hypothetical
           protein T19H5.7 protein.
          Length = 68

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 739 ITSSIMKWCSLKFCKVRAAISKYNYL*CPFTL 834
           IT     WC+ K C  +  ++KYN+  C F L
Sbjct: 26  ITDDGWGWCTNKKCDEKCQMAKYNFGTCEFYL 57


>Z83231-6|CAI46597.1|  373|Caenorhabditis elegans Hypothetical
           protein F57G9.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 104 KECPKKFNFYDRDAKF*LTKSIEE-QI*KKLRVSITFTTNRVSIIIV 241
           K+C +  NFY    KF LT++++  ++   L + +      VSI I+
Sbjct: 243 KKCERNVNFYTLSVKFQLTENVQSFKLLHVLVIEVAIMITTVSITIL 289


>AL032647-8|CAI46617.1|  373|Caenorhabditis elegans Hypothetical
           protein F57G9.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 104 KECPKKFNFYDRDAKF*LTKSIEE-QI*KKLRVSITFTTNRVSIIIV 241
           K+C +  NFY    KF LT++++  ++   L + +      VSI I+
Sbjct: 243 KKCERNVNFYTLSVKFQLTENVQSFKLLHVLVIEVAIMITTVSITIL 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,406
Number of Sequences: 27780
Number of extensions: 336147
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)