Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e05
         (501 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.38 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.2  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   3.6  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.2  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 233 KSSSFISKSEQLYTNSSFSLLGASKYWFTSSSCST*PLISAAMH 364
           KSS   +KS  + T +S + +  +    TSSS S+ P ++AA H
Sbjct: 139 KSSKLKNKSAPILTKTSPTPVSINNNTSTSSSASS-PSVTAAPH 181


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 345 KGQVEQLELVNQYLDAPKSEKLEFVYNCSDLDINEEDLKSLC 220
           K   ++ +LV+++ D+P S+K         L++NE      C
Sbjct: 205 KSSAKRKQLVSEHPDSPNSKKSATPSPPPQLEVNERKENLTC 246


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 261 NNCIQILAFHFWAR 302
           +N  QILA++FW +
Sbjct: 64  SNVYQILAYNFWKK 77


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 59  SKQKLFTCCFSSI*HMAF 112
           SKQ++F CC      M F
Sbjct: 100 SKQEIFNCCSKKSFRMNF 117


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 197 LPKDTMRQPC*RPSQRFTMHS*NTANYL*TP 105
           + K++ +    RP+   T H  NT++ + TP
Sbjct: 238 IKKESPQMQSYRPTGNITPHGSNTSSLITTP 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,364
Number of Sequences: 336
Number of extensions: 2337
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)