Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e04
         (864 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CUB5 Cluster: Large Sec7 domain containing protein; n...    38   0.25 

>UniRef50_Q5CUB5 Cluster: Large Sec7 domain containing protein; n=2;
            Cryptosporidium|Rep: Large Sec7 domain containing protein
            - Cryptosporidium parvum Iowa II
          Length = 2578

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 30/82 (36%), Positives = 42/82 (51%)
 Frame = +2

Query: 17   LHYYSKN*KSYLSFIL*LIVKIINSKPWTVELQSKFLILKDFFIEIKKLIRIHL*PSTYY 196
            L YY     S    IL   VKI  SK  T+E + K L   D++ E K+L  I + P+ ++
Sbjct: 2399 LQYYKNELLSQCEDILEKYVKIEKSKNNTLERREKGLHSDDYY-EKKRLSSI-ISPNIHF 2456

Query: 197  IHYFNSIYTDITWHKF*LINSY 262
             H+FNS Y  I  +K  +  SY
Sbjct: 2457 NHHFNSSYDRILKNKVDITYSY 2478


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,130,857
Number of Sequences: 1657284
Number of extensions: 12683673
Number of successful extensions: 24649
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24648
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)