Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e04
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   3.4  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    27   4.5  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.0  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   7.9  

>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +2

Query: 326 FIVEKLIKSLAIIEVLIIAPNKLAFV 403
           F+V +L++   +IE+L +APN ++F+
Sbjct: 232 FVVTRLLQRNVVIELLDLAPNGVSFL 257


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = +2

Query: 41  KSYLSFIL*LIVKIINSKPWTVELQSKFLILKDFFIEIKKLIRIHL*PSTYYIHYFNSIY 220
           K+Y + ++ L + +    P  + L    ++    F+E  +++R+   P    IH F   Y
Sbjct: 270 KTYHALVVFLFLPVCCLDPHFLHLSFSGVLFIFLFVEGIRILRLK--PFGKMIHEFLWEY 327

Query: 221 TDITWHKF*LINSYI*VIL 277
           TD   HK  LI S+I +++
Sbjct: 328 TDNRDHKGPLIISHIYLLI 346


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +3

Query: 639 HSLCM*KCQSKSNQLGVTKAIDPISKIACEKLLNTTFHTRNSIYNLKHGF*RCNXFL 809
           H+L + KC+S SN+LG  + +  +      ++L+  ++   ++  +   F  C+  L
Sbjct: 105 HALFVDKCRSISNKLGPREQVYLVGFDTLIRILDCKYYKEKAMQQVLQPFFSCSQIL 161


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 405 DTNASLLGAIIRTSMMARLLISFS 334
           DTNAS+ G+++ T ++  L  SFS
Sbjct: 807 DTNASIKGSVVNTCVLDFLYKSFS 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,123
Number of Sequences: 5004
Number of extensions: 60207
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)