Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e02
(855 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q06694 Cluster: Uncharacterized 26.9 kDa protein in GP4... 297 3e-79
UniRef50_O10334 Cluster: Uncharacterized 24.9 kDa protein; n=9; ... 184 3e-45
UniRef50_Q80LN2 Cluster: Putative uncharacterized protein; n=1; ... 166 5e-40
UniRef50_Q0IL27 Cluster: ORF92; n=4; root|Rep: ORF92 - Leucania ... 164 3e-39
UniRef50_Q461Z2 Cluster: Orf74; n=3; Nucleopolyhedrovirus|Rep: O... 163 5e-39
UniRef50_Q06691 Cluster: Telokin-like protein 20; n=6; Nucleopol... 147 4e-34
UniRef50_Q0N427 Cluster: Ac81-like protein; n=4; Nucleopolyhedro... 141 2e-32
UniRef50_Q6QXL4 Cluster: ORF94; n=9; Granulovirus|Rep: ORF94 - A... 138 1e-31
UniRef50_Q8QLD1 Cluster: Putative uncharacterized protein; n=1; ... 124 2e-27
UniRef50_Q6JKB2 Cluster: Putative uncharacterized protein; n=3; ... 83 1e-14
UniRef50_Q9NVH0 Cluster: Exonuclease 3'-5' domain-like-containin... 34 4.0
UniRef50_Q66GN2 Cluster: At5g01560; n=5; Arabidopsis thaliana|Re... 34 5.3
>UniRef50_Q06694 Cluster: Uncharacterized 26.9 kDa protein in
GP41-PNK intergenic region; n=11;
Nucleopolyhedrovirus|Rep: Uncharacterized 26.9 kDa
protein in GP41-PNK intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 233
Score = 297 bits (728), Expect = 3e-79
Identities = 140/164 (85%), Positives = 145/164 (88%)
Frame = -2
Query: 638 PPLSMSKKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKN 459
PPLSMSKK+TPTLL+SISKKISTTET QRLRNKNLTTLNKIKYDSELLLHYLYDD NKN
Sbjct: 10 PPLSMSKKETPTLLDSISKKISTTETLQRLRNKNLTTLNKIKYDSELLLHYLYDDHHNKN 69
Query: 458 SDYAXXXXXXXXXXXXXXXKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGL 279
SDYA KTGASILAHYFAQ+HVS GYSFEFHPGSQPRTFQTIHTDGL
Sbjct: 70 SDYANNNINVIKISKVKVKKTGASILAHYFAQIHVSTGYSFEFHPGSQPRTFQTIHTDGL 129
Query: 278 IIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRRISFQ 147
IIKVLILCDECCKKELRDYIKGENSFNVAF+NCESILCRR+SFQ
Sbjct: 130 IIKVLILCDECCKKELRDYIKGENSFNVAFRNCESILCRRVSFQ 173
Score = 68.1 bits (159), Expect = 3e-10
Identities = 33/50 (66%), Positives = 35/50 (70%)
Frame = -3
Query: 151 FXXVLMTCAVLLLLFNVEKFSMXXXXXXXXXXXXLFCHNNYIISNPCIEF 2
F VL+TCA+LLLLFNVEKFSM LFCHNNYIISNP IEF
Sbjct: 172 FQTVLLTCAILLLLFNVEKFSMINLLIILLILLSLFCHNNYIISNPYIEF 221
>UniRef50_O10334 Cluster: Uncharacterized 24.9 kDa protein; n=9;
Nucleopolyhedrovirus|Rep: Uncharacterized 24.9 kDa
protein - Orgyia pseudotsugata multicapsid polyhedrosis
virus (OpMNPV)
Length = 218
Score = 184 bits (448), Expect = 3e-45
Identities = 89/137 (64%), Positives = 101/137 (73%)
Frame = -2
Query: 557 QRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYAXXXXXXXXXXXXXXXKTGASILA 378
+R ++KN T++NKIKYDSELLL YLY+ +D KTGASILA
Sbjct: 26 RRPKSKNWTSVNKIKYDSELLLQYLYE---GFGADRPYSDINVIKVYKVKVKKTGASILA 82
Query: 377 HYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILCDECCKKELRDYIKGENSFN 198
HYFA V S GY FEFHPGSQPRTFQT+HTDGLIIKV I+CD CCK ELR YI+GEN FN
Sbjct: 83 HYFAHVSTSTGYEFEFHPGSQPRTFQTVHTDGLIIKVHIMCDACCKAELRRYIEGENGFN 142
Query: 197 VAFKNCESILCRRISFQ 147
VAF+NCESILCRR+SFQ
Sbjct: 143 VAFRNCESILCRRVSFQ 159
Score = 50.4 bits (115), Expect = 6e-05
Identities = 25/50 (50%), Positives = 29/50 (58%)
Frame = -3
Query: 151 FXXVLMTCAVLLLLFNVEKFSMXXXXXXXXXXXXLFCHNNYIISNPCIEF 2
F +L+ +LLLLFNVE FS LFCHNNYIISNP + F
Sbjct: 158 FQTLLLGSVILLLLFNVENFSALNLLVILLILLALFCHNNYIISNPHVVF 207
>UniRef50_Q80LN2 Cluster: Putative uncharacterized protein; n=1;
Adoxophyes honmai NPV|Rep: Putative uncharacterized
protein - Adoxophyes honmai nucleopolyhedrovirus
Length = 267
Score = 166 bits (404), Expect = 5e-40
Identities = 83/174 (47%), Positives = 111/174 (63%), Gaps = 9/174 (5%)
Frame = -2
Query: 641 QPPLSMSKKKTPTLLESISKKISTT-ETFQRLRNKNLTTLNKIKYDSELLLHYLY----- 480
QP + M+ T T++ + + Q L+ KN T LN+IKYD ELL+HYL+
Sbjct: 28 QPEMEMTTTTTTTMITHPTDHTTNQFHVLQNLKLKNATILNRIKYDPELLIHYLFNNYHM 87
Query: 479 ---DDQQNKNSDYAXXXXXXXXXXXXXXXKTGASILAHYFAQVHVSNGYSFEFHPGSQPR 309
DD Q + D GA ILAHY+A +++ N YSFEFHPGSQP+
Sbjct: 88 LLDDDTQLTDHDLYNYINVIKICKVKVKKSYGA-ILAHYYAHINLFNNYSFEFHPGSQPK 146
Query: 308 TFQTIHTDGLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRRISFQ 147
TFQT+HT+G +I V++LC+ CC++ELR+++ GENSFNVAFKNCESILC+R SFQ
Sbjct: 147 TFQTVHTNGHVIYVMVLCNTCCEEELRNFVTGENSFNVAFKNCESILCKRKSFQ 200
>UniRef50_Q0IL27 Cluster: ORF92; n=4; root|Rep: ORF92 - Leucania
separata nuclear polyhedrosis virus (LsNPV)
Length = 240
Score = 164 bits (398), Expect = 3e-39
Identities = 78/168 (46%), Positives = 111/168 (66%), Gaps = 5/168 (2%)
Frame = -2
Query: 596 ESISKKISTT-----ETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYAXXXXX 432
E K ++TT Q+ + N + KIKYD ++LL YL+D + + +D
Sbjct: 30 EEADKSLTTTILTLMNRLQKSESPNENAIQKIKYDPKILLSYLFDGKNDNTNDV-----N 84
Query: 431 XXXXXXXXXXKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILCD 252
KTG ++LAHY+A++ +S+GY+FEFHPGSQPRTFQT+HTDG+II V ILC+
Sbjct: 85 VIKVCKVRVRKTGGAMLAHYYARIKLSSGYTFEFHPGSQPRTFQTVHTDGIIILVRILCN 144
Query: 251 ECCKKELRDYIKGENSFNVAFKNCESILCRRISFQXGADDLRRFVVVI 108
ECC+KEL+D+++GEN FN+AF+NCESILC+R S Q + +V+I
Sbjct: 145 ECCRKELKDFVEGENKFNIAFQNCESILCKRKSMQTVLITIAVIIVLI 192
>UniRef50_Q461Z2 Cluster: Orf74; n=3; Nucleopolyhedrovirus|Rep:
Orf74 - Trichoplusia ni SNPV
Length = 242
Score = 163 bits (396), Expect = 5e-39
Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 4/164 (2%)
Frame = -2
Query: 590 ISKKISTTETFQRLRNKNLTT-LNKIKYDSELLLHYLYD---DQQNKNSDYAXXXXXXXX 423
I I+T ++ +KNLTT LN+IKYD ELL+HYL+D D +N N
Sbjct: 10 IPTAITTAAENYQINDKNLTTTLNRIKYDPELLIHYLFDGLTDSENVN---------IIK 60
Query: 422 XXXXXXXKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILCDECC 243
KT ++LAHY+A + +SNGYSFE HPGSQP+TFQ +H+DG +I L+LCD+CC
Sbjct: 61 VCKTRVKKTYGTMLAHYYAHIDISNGYSFELHPGSQPKTFQIVHSDGSMIMALVLCDDCC 120
Query: 242 KKELRDYIKGENSFNVAFKNCESILCRRISFQXGADDLRRFVVV 111
K ELR +I GEN+FNVAFKNCESILC+R S Q L V+V
Sbjct: 121 KDELRSFIDGENNFNVAFKNCESILCKRKSMQTVFVSLALVVIV 164
>UniRef50_Q06691 Cluster: Telokin-like protein 20; n=6;
Nucleopolyhedrovirus|Rep: Telokin-like protein 20 -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 180
Score = 147 bits (356), Expect = 4e-34
Identities = 75/110 (68%), Positives = 82/110 (74%)
Frame = -1
Query: 846 LGNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKTDAAVNTSSPKRXXXXXX 667
L NLVQNGEYDLNAIMFNCAEIKLNKGQMLFQTKI+R DN+KTDAAV+TSSPKR
Sbjct: 72 LCNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQTKIWRSDNSKTDAAVHTSSPKR-TVETE 130
Query: 666 XXXXXXXXXXXXXXEQKENTDAVGIDFEENIDDGDVSAPKKQKLDNAEQN 517
EQ+ N D VG+DFEENIDDGD PKKQKLDNA+Q+
Sbjct: 131 NDDDGEAASAAAIDEQEGNADVVGLDFEENIDDGDAPTPKKQKLDNAKQD 180
>UniRef50_Q0N427 Cluster: Ac81-like protein; n=4;
Nucleopolyhedrovirus|Rep: Ac81-like protein - Clanis
bilineata nucleopolyhedrosis virus
Length = 317
Score = 141 bits (341), Expect = 2e-32
Identities = 66/144 (45%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
Frame = -2
Query: 575 STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDD-QQNKNSDYAXXXXXXXXXXXXXXXK 399
S +L +KN ++K+D ELL+HYL+D+ + ++D K
Sbjct: 108 SVPTMLHQLNDKNWN--ERVKFDPELLIHYLFDNIDMHTDTDV-----NVIKVCKIRVTK 160
Query: 398 TGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILCDECCKKELRDYI 219
T ++L HY+A + ++N Y FEFHPGSQPRTFQT+HT G ++ V ++C+ECCK LR +I
Sbjct: 161 TMGTMLTHYYAHIKINNDYEFEFHPGSQPRTFQTVHTKGFVVGVYLVCNECCKNYLRTFI 220
Query: 218 KGENSFNVAFKNCESILCRRISFQ 147
+GEN+FNV FKNCE+ILC+R SFQ
Sbjct: 221 EGENNFNVIFKNCETILCQRHSFQ 244
>UniRef50_Q6QXL4 Cluster: ORF94; n=9; Granulovirus|Rep: ORF94 -
Agrotis segetum granulosis virus (AsGV) (Agrotis
segetumgranulovirus)
Length = 197
Score = 138 bits (335), Expect = 1e-31
Identities = 67/128 (52%), Positives = 89/128 (69%), Gaps = 2/128 (1%)
Frame = -2
Query: 524 NKIKYDSELLLHYLYDDQQNKNSDYAXXXXXXXXXXXXXXXKTGASILAHYFAQVHVSNG 345
+++K+DSE+LL Y+YD +++ KTG ++LAHY+AQV VSN
Sbjct: 9 DRVKFDSEVLLRYIYDYSLTASNE-----PNVIKICRVKVRKTGGAVLAHYYAQVFVSNK 63
Query: 344 YSFEFHPGSQPRTFQTIHTDG--LIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESI 171
+SFEFHPGSQP+TFQ + T+ L + V +CDEC K+ELRDYI+GEN FN+AFKNCESI
Sbjct: 64 FSFEFHPGSQPKTFQNVDTEKEHLPVCVKFMCDECTKQELRDYIEGENQFNIAFKNCESI 123
Query: 170 LCRRISFQ 147
LC+R S Q
Sbjct: 124 LCKRKSVQ 131
>UniRef50_Q8QLD1 Cluster: Putative uncharacterized protein; n=1;
Mamestra configurata NPV-A|Rep: Putative uncharacterized
protein - Mamestra configurata NPV-A
Length = 173
Score = 124 bits (300), Expect = 2e-27
Identities = 55/115 (47%), Positives = 76/115 (66%)
Frame = -2
Query: 554 RLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYAXXXXXXXXXXXXXXXKTGASILAH 375
+L +KNLT L ++KYD LL+HY++D N + T ++LAH
Sbjct: 42 QLNDKNLTNLTRVKYDENLLIHYIFDGLTNSENTNVIKVCKVRVRK------TCGTLLAH 95
Query: 374 YFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILCDECCKKELRDYIKGE 210
Y+AQV VSNG+SFEFHPGSQPRTFQ +HTDG I ++++CD CCK+ELR ++K +
Sbjct: 96 YYAQVDVSNGFSFEFHPGSQPRTFQNVHTDGNTIIIMMMCDNCCKEELRTFVKAK 150
Score = 34.3 bits (75), Expect = 4.0
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3
Query: 217 KVKIRLMWPLKIAKAFCVGASV 152
K K LMWPLKIA+AFC V
Sbjct: 148 KAKTVLMWPLKIARAFCANVKV 169
>UniRef50_Q6JKB2 Cluster: Putative uncharacterized protein; n=3;
Nucleopolyhedrovirus|Rep: Putative uncharacterized
protein - Neodiprion sertifer NPV
Length = 176
Score = 82.6 bits (195), Expect = 1e-14
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Frame = -2
Query: 389 SILAHYFAQVHVSNGYSFEFHPGSQPRTFQT---IHTDGLIIKVLILCDECCKKELRDYI 219
S+L+H+FA++ + NG FE HPGSQP TFQ+ + + ++ + CDEC KK L ++
Sbjct: 42 SLLSHFFAKIDI-NGQKFEIHPGSQPNTFQSYKPLASVDELVSEFVECDECMKKRLIKFV 100
Query: 218 KGENSFNVAFKNCESILCRRISFQ 147
+ EN FN+ NCE I C++ S+Q
Sbjct: 101 EDENKFNILVNNCEKISCQQTSWQ 124
>UniRef50_Q9NVH0 Cluster: Exonuclease 3'-5' domain-like-containing
protein 2; n=29; Euteleostomi|Rep: Exonuclease 3'-5'
domain-like-containing protein 2 - Homo sapiens (Human)
Length = 496
Score = 34.3 bits (75), Expect = 4.0
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -2
Query: 314 PRTFQTIHTDGLIIKVLILCDECCKKELRDY---IKGENSFN-VAFKNCESILCRRISFQ 147
PRT I DG I+KV + C E K L+DY ++G +A + ++LC +S +
Sbjct: 24 PRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLK 83
Query: 146 XGADDLRRF 120
A+ + F
Sbjct: 84 SLAETVLNF 92
>UniRef50_Q66GN2 Cluster: At5g01560; n=5; Arabidopsis thaliana|Rep:
At5g01560 - Arabidopsis thaliana (Mouse-ear cress)
Length = 691
Score = 33.9 bits (74), Expect = 5.3
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 620 KKKTPTLLESISKKISTTETFQRLRNKNLTTLNK-IKYDSELLLHYLY 480
KK TP ++ + + ++ E+ RLR+KNL L K+ ++LLL Y Y
Sbjct: 392 KKITPNSMQGVREFVAEIESLGRLRHKNLVNLQGWCKHRNDLLLIYDY 439
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,834,335
Number of Sequences: 1657284
Number of extensions: 10237911
Number of successful extensions: 26021
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 25075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26004
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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