Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e02
         (855 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     26   0.44 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    26   0.44 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           26   0.44 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   1.0  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   1.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 398 TGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 267
           TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 398 TGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 267
           TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 398 TGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 267
           TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 816 DLNAIMFNCAEIKLNKGQMLFQTKIYRPD 730
           D N       EI LN   +LF  K++RP+
Sbjct: 210 DCNKNTSTSKEIALNNDVLLFFVKVFRPE 238


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -2

Query: 677 KLKMXXXXXXXTQPPLSMSKKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSEL 498
           K+K         + PL++++    T  E + KK S+ E F   R K L  ++     +  
Sbjct: 64  KIKSCRPFKAYIKDPLTLAQGLVST--EMLLKKDSS-EAFNEFRTKILAQVHGTNNGTNK 120

Query: 497 LLHYLYDDQQNKNSD 453
            +  L    QNKN D
Sbjct: 121 NMRRLSTTTQNKNDD 135


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 580  FFEIDSNSVGVFFLLIDSGGC 642
            F E+ SNS+ +       GGC
Sbjct: 1499 FIEVSSNSITLHLSAWSDGGC 1519


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 753 QTKIYRPDNNKTDAAVNTSS 694
           Q + YRP  N T    NTSS
Sbjct: 244 QMQSYRPTGNITPHGSNTSS 263


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,371
Number of Sequences: 336
Number of extensions: 2884
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)