Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e01
         (280 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   2.5  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   3.3  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   3.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   3.3  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    20   4.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    19   7.5  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    19   9.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    19   9.9  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    19   9.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    19   9.9  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 70  GYFMVVTPLCTELSLQLLFVVG 135
           G+  + +P CTEL + +L  +G
Sbjct: 102 GFSWIASPACTELEVVMLDWLG 123


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 183  CTRTLHCL 160
            CTR LHCL
Sbjct: 1291 CTRYLHCL 1298


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 252 QWYQLVRIQNSLPE 211
           QW  LV  Q+ LPE
Sbjct: 46  QWINLVTQQHGLPE 59


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 252 QWYQLVRIQNSLPE 211
           QW  LV  Q+ LPE
Sbjct: 46  QWINLVTQQHGLPE 59


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 45  QLYLPPSSWLLHGSNPTMYRTFPTTS 122
           Q Y P  +   HGSN +   T P+ S
Sbjct: 246 QSYRPTGNITPHGSNTSSLITTPSPS 271


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 96  MYRTFPTTSVCSRYWS 143
           +Y  F   + C+RYW+
Sbjct: 102 LYGIFGHETSCTRYWT 117


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = -2

Query: 174 TLHCLKTPLLMTNTYYKQK 118
           +L+C    +++  T+YK++
Sbjct: 74  SLYCFNYYVIVVTTFYKRR 92


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 54  LPPSSWLLHGSNPTMYRTFPTTSVCSRYWS*AKVSLNNVASV 179
           +PP   + HG+ P        T  CS      K++ +  +SV
Sbjct: 23  IPPHYNIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTSSV 64


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 13  EPVCTTVNPTDSYIY 57
           EP C  +NP +  +Y
Sbjct: 363 EPPCGQLNPDNPNVY 377


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = -3

Query: 266 RNMKNSGISLCGFKTHYQRRVYLSRLC 186
           R    S       +TH   R Y  RLC
Sbjct: 57  RRFSQSSSVTTHMRTHSGERPYRCRLC 83


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = -3

Query: 266 RNMKNSGISLCGFKTHYQRRVYLSRLC 186
           R    S       +TH   R Y  RLC
Sbjct: 313 RRFSQSSSVTTHMRTHSGERPYRCRLC 339


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,280
Number of Sequences: 336
Number of extensions: 1477
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4684108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)