Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e01
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    24   4.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    23   8.0  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    23   8.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    23   8.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    23   8.0  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 46  SYIYH--HRHGYFMVVTPLCT 102
           SY+ H   +HG F+VV PL T
Sbjct: 415 SYLAHSLRQHGPFLVVVPLST 435


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 42  RQLYLPPSSW 71
           R LY+PPS+W
Sbjct: 362 RTLYIPPSAW 371


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   KFIKEPVCTTVNPTDSYIYHHRHGYFMV 84
           KF+K  + T V    + ++H R+ +F +
Sbjct: 264 KFVKNVIATVVTVPVAELHHIRNAFFNI 291


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 155 HLCS*PIPTTNRSCRESSVHSGVTTM 78
           HL + P+P+TN S  E S+ +GV  +
Sbjct: 109 HLIT-PLPSTNASHSEVSLSAGVNDL 133


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 181  HTDATLFKDTFAH 143
            H DA LF++TF H
Sbjct: 1000 HNDAKLFENTFEH 1012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,252,530
Number of Sequences: 5004
Number of extensions: 23312
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)