Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e01
(280 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0414 + 17755427-17756000,17756181-17756308,17756434-177566... 27 1.6
04_03_0512 + 16675940-16677193,16677325-16677853,16678920-166789... 27 2.1
10_08_0011 + 14088375-14089241 27 2.8
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073... 27 2.8
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 26 3.7
09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939 26 4.9
02_04_0470 - 23183925-23184743,23184929-23185153 26 4.9
11_04_0041 - 12690287-12690816,12691087-12691378 25 6.5
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 25 6.5
01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557 25 6.5
01_06_0532 + 30048824-30050296 25 6.5
01_07_0108 - 41126074-41127342 22 7.5
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096... 25 8.6
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487... 25 8.6
>10_08_0414 +
17755427-17756000,17756181-17756308,17756434-17756694,
17756774-17757036,17758662-17759019
Length = 527
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 109 KVRYIVGLLP*SNHDDGGKYNCLSD 35
+V Y VG+L +N DDG ++CL +
Sbjct: 426 QVMYAVGILRSANPDDGCSHHCLQE 450
>04_03_0512 +
16675940-16677193,16677325-16677853,16678920-16678999,
16679450-16679533
Length = 648
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 249 WYQLVRIQNSLPEAGLLKQVVHCTRTLHCL 160
W + VR+ + +GL+ VV+C +H L
Sbjct: 150 WKESVRVFKEMSSSGLIPCVVNCNSFIHAL 179
>10_08_0011 + 14088375-14089241
Length = 288
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 111 PTTSVCSRYWS*AKVSLNNVASVCNAQPA*VNPPLVMSFESAQADTTVF 257
PT V S YW A +S +VA+V A P V+ + + +S Q VF
Sbjct: 52 PTNGVFSPYWDTANLSPADVAAVKAAHPN-VSVMVGLGGDSVQDTAKVF 99
>03_06_0557 +
34704990-34705400,34706271-34706485,34707142-34707367,
34707447-34707532,34708030-34708121,34708232-34708471,
34709455-34709750
Length = 521
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 249 WYQLVRIQNSLPEAGLLKQVVHCTRTLHCLKTP 151
WY + RI P L+ + C T HCL TP
Sbjct: 313 WYPIYRI----PTGPTLEDLDACFLTFHCLATP 341
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = -2
Query: 180 TRTLHCLKTPLLMTNTYYKQKL*GKFGT*WGYYHEVTMTMVVNITVCRINSRTDW 16
T L C KT TNT + G G Y +T T IT CR+ W
Sbjct: 18 TLGLLCRKTSKPSTNTLAQNLEDGGMGFHRYYQRRITRTGFRAITTCRLPLTNSW 72
>09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939
Length = 212
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 140 PIPTTNRSCRESSVHSGV 87
P PT R CR S+ H GV
Sbjct: 51 PAPTQLRGCRRSNQHQGV 68
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 48 LYLPPSSWLLHGSNPTMYRTFPTTSVCSRY 137
++ PP + LLHG PT + F T + R+
Sbjct: 19 IFNPPKNKLLHGPLPTSTKAFNTRPLRRRH 48
>11_04_0041 - 12690287-12690816,12691087-12691378
Length = 273
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 91 PLCTELSLQLLFVVGIGH 144
P+CT+ Q+ +++G+GH
Sbjct: 41 PVCTKTGAQVAYMLGLGH 58
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 58 HHRHGYFMVVTPLCTEL 108
HH+ G FM V P+C+ L
Sbjct: 39 HHKLGPFMQVLPICSRL 55
>01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557
Length = 912
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 1 KFIKEPVCTTVNPTDSYIYHHRHGYFMVVTP 93
KF E V +NP D Y++ H Y ++ P
Sbjct: 222 KFFFEKVVEVINPEDDYVW--VHDYHLMALP 250
>01_06_0532 + 30048824-30050296
Length = 490
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 212 RRVYLSRLCIAHGRYIV 162
RR+Y SR CI HG I+
Sbjct: 282 RRLYSSRSCIPHGSKII 298
>01_07_0108 - 41126074-41127342
Length = 422
Score = 22.2 bits (45), Expect(2) = 7.5
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 51 YLPPSSWLLHGSNPTMYR 104
Y PPS W+ +G YR
Sbjct: 94 YTPPSCWMQYGGAGGDYR 111
Score = 21.4 bits (43), Expect(2) = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 78 HGSNPTMYRTFPTTSVCS 131
+GSNP TFP + C+
Sbjct: 144 NGSNPLYPVTFPAVASCA 161
>10_08_0858 -
21108283-21108387,21108820-21108889,21109490-21109646,
21109930-21110062,21110409-21110583,21113353-21113453,
21113620-21113706,21115871-21115931,21116114-21116178,
21116534-21117631
Length = 683
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 264 KYEKQWYQLVRIQNSLPEAGLLKQ 193
K+ K+WY ++Q GL+KQ
Sbjct: 561 KFRKKWYHSSKLQKRRCTVGLIKQ 584
>04_04_0090 -
22747049-22747282,22747438-22747847,22748562-22748757,
22749511-22749583,22749673-22749753,22749855-22749940,
22750050-22750126,22750313-22750409,22751025-22752020,
22752882-22752926
Length = 764
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 66 SWLLHGSNPTMYRTFPTTSVCSRYWS 143
+WL HG P + R T+S R WS
Sbjct: 565 AWLAHGRVPVLPRRRRTSSSQRRAWS 590
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,844,989
Number of Sequences: 37544
Number of extensions: 143153
Number of successful extensions: 318
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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