Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e01
         (280 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)     28   1.3  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    26   4.1  
SB_57348| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_15977| Best HMM Match : Pkinase (HMM E-Value=2e-06)                 26   5.4  
SB_1641| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.4  
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)
          Length = 636

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 60  PSSWLLHGSNPTMYRTFPTT-SVCSRYWS*AKVSLNNVA-SVCNAQ 191
           P   L    NP        T ++ SRYWS  K S+N+++ SV  AQ
Sbjct: 556 PKESLKRAPNPNAIAVLEKTIAIQSRYWSSVKRSINHISHSVVEAQ 601


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 1    KFIKEPVCTTVNPTDSYIYHHRHGYFMVVTPLCT 102
            +FI +P  + ++ + S + HH H Y +++  + T
Sbjct: 1221 EFILDPRLSPLSSSASSLRHHHHHYVIIIITIVT 1254


>SB_57348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 719

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 196 AGCALHTDATLFKDTFAHDQYLLQTEVVGKVRYIVGLLP*SNHDDGGKYNCLSD 35
           A C  H D  + +DT AHD    + EV       V  +   N  DG   + L D
Sbjct: 329 AKCLKHKDELISRDTIAHDDSQSEGEVSFTNPDFVDSISDENDADGQIDHTLDD 382


>SB_15977| Best HMM Match : Pkinase (HMM E-Value=2e-06)
          Length = 429

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 240 LVRIQNSLPEAGLLKQVVHCTRTLHCLK 157
           L R+QN +PE  L K  V   + LH LK
Sbjct: 289 LKRLQNPIPEHILGKMAVAIVKALHYLK 316


>SB_1641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 4   FIKEPVCTTVNPTDSYIYHHRHGY 75
           F  + +C T    D+ I HHR GY
Sbjct: 35  FRLQKICDTQAVLDNEITHHRQGY 58


>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 93  WGYYHEVTMTMVVNITVCR 37
           W +YH    T  VN T+C+
Sbjct: 790 WAHYHSYERTCQVNNTICQ 808


>SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 247 VSACADSKLITRGGFT*AGCALHTDATLFKDTFAHDQYLL-QTEVVGKVRYIV 92
           V+   D+KLI   G    G  + T    +K+ + HD   + ++E + KV  I+
Sbjct: 56  VTVFLDTKLIADSGTALKGANIQTFPNGYKNHYVHDHVSIEESENLKKVEKII 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,403,417
Number of Sequences: 59808
Number of extensions: 182670
Number of successful extensions: 416
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)