Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e01
         (280 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-12|CAD27763.1|  450|Anopheles gambiae putative tachykin...    26   0.23 
X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    23   1.6  
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    22   3.8  
AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    22   3.8  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    22   3.8  
AJ970243-1|CAI96715.1|  129|Anopheles gambiae putative reverse t...    21   6.6  
AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    21   6.6  
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    21   6.6  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            21   6.6  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    21   6.6  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    21   8.7  

>AJ439060-12|CAD27763.1|  450|Anopheles gambiae putative tachykinin
           receptor protein.
          Length = 450

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 66  SWLLHGS-NPTMYRTFPTTSVCSRYWS*AKVSLNNVASVCNAQPA*VNPP 212
           S+L +GS +PT  R + T  +           LN   S+C A PA  NPP
Sbjct: 393 SFLYNGSQSPTGQRKWQTGPMRRVNTMLTSQMLNQTTSLCCASPADSNPP 442


>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 145 HDQYLLQTEVVGKVRYIVGLLP*SNHDDGGK 53
           HD Y+ + +V+ K R+ +  L   + D GGK
Sbjct: 211 HDVYIRKVKVLKKPRFDLSSLMELHGDGGGK 241


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 174 TLHCLKTPLLMTNT 133
           T HC KTP L+  T
Sbjct: 45  THHCQKTPFLLVGT 58


>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 70  GYFMVVTPLCTELSLQLLFVVG 135
           G+  + +P CTEL + +L  +G
Sbjct: 112 GFTWIASPACTELEVVMLDWLG 133


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 70  GYFMVVTPLCTELSLQLLFVVG 135
           G+  + +P CTEL + +L  +G
Sbjct: 143 GFTWIASPACTELEVVMLDWLG 164


>AJ970243-1|CAI96715.1|  129|Anopheles gambiae putative reverse
          transcriptase protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 46 SYIYHHRHGYF 78
          SYI  H+HG+F
Sbjct: 29 SYISTHQHGFF 39


>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 42  RQLYLPPSSWLLHGSNP 92
           ++L+    +WL+HG++P
Sbjct: 175 KELHELHENWLIHGASP 191


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 42  RQLYLPPSSWLLHGSNP 92
           ++L+    +WL+HG++P
Sbjct: 176 KELHELHENWLIHGASP 192


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -2

Query: 237 VRIQNSLPEAGLLKQVVHCTRTLHC 163
           V +  +LP   L K   HC    HC
Sbjct: 722 VPLVEALPNQFLCKYDTHCFALCHC 746


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 255 KQWYQLVRIQNSLPEAGLLKQVVHCTR 175
           K WYQ+ +     PE   + + +H  R
Sbjct: 255 KMWYQVYKQIREAPEMEKMNEKLHIGR 281


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 211 LW**VLNPHKLIPLFFIFL 267
           LW   LN  +LI L F+FL
Sbjct: 10  LWIHFLNITQLISLIFVFL 28


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 326,904
Number of Sequences: 2352
Number of extensions: 6378
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 16604898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)