Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e01
         (280 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011513-1|AAS15649.1|  337|Drosophila melanogaster UT01387p pro...    27   4.7  
AE014134-369|AAF51282.3|  337|Drosophila melanogaster CG31679-PA...    27   4.7  
AY129438-1|AAM76180.1|  882|Drosophila melanogaster LD07266p pro...    26   6.2  
AE014296-2631|AAN11761.1|  822|Drosophila melanogaster CG5284-PB...    26   6.2  

>BT011513-1|AAS15649.1|  337|Drosophila melanogaster UT01387p
           protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 43  DSYIYHHRHGYFMVVTPLCTELSLQL 120
           D Y+YHHRH  + +++   T+   +L
Sbjct: 44  DPYVYHHRHKLYPMLSTFGTDHEARL 69


>AE014134-369|AAF51282.3|  337|Drosophila melanogaster CG31679-PA
           protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 43  DSYIYHHRHGYFMVVTPLCTELSLQL 120
           D Y+YHHRH  + +++   T+   +L
Sbjct: 44  DPYVYHHRHKLYPMLSTFGTDHEARL 69


>AY129438-1|AAM76180.1|  882|Drosophila melanogaster LD07266p
           protein.
          Length = 882

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 238 CADSKLITRGGFT*AGCALHTDATLFKDTFAHDQYLLQTEVVGKVRYIVGLL 83
           CADS LIT G +   G A                 ++  E+ G VRYIV L+
Sbjct: 629 CADSNLITPGLYAVVGAAAVLGGV---TRMTVSLVVIMFELTGGVRYIVPLM 677


>AE014296-2631|AAN11761.1|  822|Drosophila melanogaster CG5284-PB,
           isoform B protein.
          Length = 822

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 238 CADSKLITRGGFT*AGCALHTDATLFKDTFAHDQYLLQTEVVGKVRYIVGLL 83
           CADS LIT G +   G A                 ++  E+ G VRYIV L+
Sbjct: 569 CADSNLITPGLYAVVGAAAVLGGV---TRMTVSLVVIMFELTGGVRYIVPLM 617


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,224
Number of Sequences: 53049
Number of extensions: 257791
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 24,988,368
effective HSP length: 71
effective length of database: 21,221,889
effective search space used: 445659669
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)