Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e01
         (280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    25   8.0  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    25   8.0  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    25   8.0  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       25   8.0  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       25   8.0  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    25   8.0  
AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical ...    25   8.0  

>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 266 RNMKNSGISLCGFKTHYQRRVYLSRLCIAHGRYIV*RHLCS*PIPTTNRSCR 111
           R   N G++ CG  +    R    R C  HG+ +V +   S   P  N SC+
Sbjct: 39  REQLNGGLT-CGGASRSSNRTLFCRKCEGHGQQVVLKGHAS-RCPFNNCSCK 88


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 269  IRNMKNSGISLCGFKTHYQRRVYLSRLCIAHGRYI 165
            + N K S I + G K H    +Y++     HGR +
Sbjct: 1125 LSNWKPSDIHVIGVKQHLDDVIYINIAITDHGRVV 1159


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 269  IRNMKNSGISLCGFKTHYQRRVYLSRLCIAHGRYI 165
            + N K S I + G K H    +Y++     HGR +
Sbjct: 1125 LSNWKPSDIHVIGVKQHLDDVIYINIAITDHGRVV 1159


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 232 PHKLIPLFFIFLML 273
           PHKL P F +FL L
Sbjct: 6   PHKLFPFFLVFLNL 19


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 232 PHKLIPLFFIFLML 273
           PHKL P F +FL L
Sbjct: 6   PHKLFPFFLVFLNL 19


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 232 PHKLIPLFFIFLML 273
           PHKL P F +FL L
Sbjct: 6   PHKLFPFFLVFLNL 19


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 269  IRNMKNSGISLCGFKTHYQRRVYLSRLCIAHGRYI 165
            + N K S I + G K H    +Y++     HGR +
Sbjct: 1125 LSNWKPSDIHVIGVKQHLDDVIYINIAITDHGRVV 1159


>AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical
           protein ZC250.2 protein.
          Length = 379

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 149 CS*PIPTTNRSCRESSVHSGVTTMK 75
           CS P P T+ S  +S VH  V T +
Sbjct: 141 CSIPFPKTSNSISDSEVHVMVKTFE 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,978,160
Number of Sequences: 27780
Number of extensions: 135306
Number of successful extensions: 293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)