Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e01
(280 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 23 0.53
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 0.92
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 0.92
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 2.1
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 2.8
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 21 3.7
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 4.9
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 20 4.9
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 20 6.5
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 19 8.6
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 19 8.6
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 19 8.6
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 19 8.6
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 19 8.6
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 19 8.6
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 19 8.6
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 19 8.6
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 19 8.6
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 19 8.6
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 19 8.6
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 19 8.6
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 19 8.6
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 19 8.6
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 19 8.6
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 19 8.6
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 23.4 bits (48), Expect = 0.53
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 123 VCSRYWS*AKVSLNNVASVCNAQ 191
+C R W +NNV SVC Q
Sbjct: 129 MCDRLWVLDSGLINNVRSVCPPQ 151
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.6 bits (46), Expect = 0.92
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 278 LLNIRNMKNSGISLCGFKTHYQ 213
LL+ ++ N G SL G+ HY+
Sbjct: 1421 LLHWKSGHNGGASLTGYTLHYR 1442
Score = 21.4 bits (43), Expect = 2.1
Identities = 5/11 (45%), Positives = 11/11 (100%)
Frame = -1
Query: 67 DDGGKYNCLSD 35
+DGG+Y+C+++
Sbjct: 492 EDGGEYSCMAE 502
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.6 bits (46), Expect = 0.92
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 278 LLNIRNMKNSGISLCGFKTHYQ 213
LL+ ++ N G SL G+ HY+
Sbjct: 1417 LLHWKSGHNGGASLTGYTLHYR 1438
Score = 21.4 bits (43), Expect = 2.1
Identities = 5/11 (45%), Positives = 11/11 (100%)
Frame = -1
Query: 67 DDGGKYNCLSD 35
+DGG+Y+C+++
Sbjct: 492 EDGGEYSCMAE 502
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.4 bits (43), Expect = 2.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 43 DSYIYHHRHGYFMVVT 90
D+Y Y+ +H Y +T
Sbjct: 89 DTYFYNGKHSYLHTIT 104
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.0 bits (42), Expect = 2.8
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 43 DSYIYHHRHGYFMVVT 90
D+Y Y+ +H Y +T
Sbjct: 121 DTYFYNGKHSYVHTIT 136
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 20.6 bits (41), Expect = 3.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 181 HTDATLFKDTFAHDQYL 131
HT + K AHD+YL
Sbjct: 794 HTPNGIVKTWIAHDRYL 810
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.2 bits (40), Expect = 4.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 181 HTDATLFKDTF 149
H DA +FKD F
Sbjct: 349 HIDARMFKDLF 359
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 20.2 bits (40), Expect = 4.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Frame = -2
Query: 93 WGYYHEVTMTMVVNIT 46
WGY+H V ++ T
Sbjct: 1677 WGYHHNVNKHCTIHRT 1692
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 19.8 bits (39), Expect = 6.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 325 REHRIIPSHYIEQIPAPVYYGNFPPRPIMVRPW 357
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/28 (32%), Positives = 11/28 (39%)
Frame = +3
Query: 111 PTTSVCSRYWS*AKVSLNNVASVCNAQP 194
P+TS C + S N CN P
Sbjct: 351 PSTSECGEFRSVVVQKRNGSMIECNISP 378
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 77 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 109
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 77 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 109
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 77 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 109
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 77 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 109
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 77 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 109
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 77 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 109
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 77 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 109
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 326 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 358
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 326 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 358
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 326 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 358
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 326 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 358
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 326 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 358
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 326 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 358
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 310 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 342
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 19.4 bits (38), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 42 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 140
R+ + PS ++ P Y FP + R W
Sbjct: 326 REHRIIPSHYIEQIPVPVYYGNFPPRPIMVRPW 358
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,648
Number of Sequences: 438
Number of extensions: 1674
Number of successful extensions: 27
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 5369883
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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