Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d23
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.032
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.23
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 28 1.2
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 2.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 2.1
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 26 4.9
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 6.5
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 8.6
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 8.6
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.5 bits (73), Expect = 0.032
Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +2
Query: 281 TSLKPNRFKLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAV 460
+SL + +PS +S PTS ++ S ++ + + + S+ L S ++
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSL 235
Query: 461 SRRAXSQSCRAVSTSRRATIISLANKMSDRLASAKSALATV---NFCVRSSILAITSFVS 631
S + S + S+S +T SL++ S AS+ S+ +++ + SS + +S +S
Sbjct: 236 S----TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 632 ISTAGAYLPVHST*GMTSSKSHS 700
S++ + P ++ ++SS S S
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSS 314
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.23
Identities = 26/93 (27%), Positives = 44/93 (47%)
Frame = +2
Query: 410 AITSCAMSAMRLASCAVSRRAXSQSCRAVSTSRRATIISLANKMSDRLASAKSALATVNF 589
A +S S+ LAS + + + + TS AT SLA+ + + A S++ + +
Sbjct: 80 AASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSS- 138
Query: 590 CVRSSILAITSFVSISTAGAYLPVHST*GMTSS 688
+ SS + +S S ST + L ST TS+
Sbjct: 139 -LASSSITSSSLASSSTTSSSLASSSTNSTTSA 170
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -1
Query: 615 IAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRETAQLANRM 436
+ ID L + + EAN+ L E RR +ET+ ++ E E A A +
Sbjct: 445 LTDIDALRPSIIQLQDIVTEANKEFQLLRAEREERRRYIETSSRELEDKDAEIAAQAYK- 503
Query: 435 ADIAQDVIAK 406
A + QD AK
Sbjct: 504 AKVDQDTSAK 513
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -1
Query: 567 DLAEANRSLILF----ANEMIVARRDVETARQDCEXARRETAQLAN 442
DL +ANR L ANE + +RD+ R+D +R+ QL N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 621 DVIAKIDDLTQKLTVANAD 565
D +KID LT+KL VANA+
Sbjct: 618 DSASKIDSLTEKLKVANAE 636
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +2
Query: 539 MSDRLASAKSALATVNFCVRSSILAI-----TSFVSISTAGAYLPVHST*GMT 682
+ DRL SA+S T C+ ++ LA T +VS T G + V S G+T
Sbjct: 128 IKDRLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLT 180
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 338 CARKNDRWAAA*NDW 294
C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 446 ASCAVSRRAXSQSCRAVSTSRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSF 625
+S ++ + S STS + ++ S +S+ S++ + VR SIL + +F
Sbjct: 559 SSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSSSSSSSSSSSIESSANAVRVSILGVAAF 618
Query: 626 VSI 634
++I
Sbjct: 619 IAI 621
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = -1
Query: 252 SMNVXNKVKEAIPRNKFKAKHNR----ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSL 91
++N + ++E +P K K N IT Y L N++GST++ AR +
Sbjct: 199 NVNSQHLMRERVPGEKILPKSNERNILITSALPYVNNVPHLGNIVGSTLSADVFARYHRA 258
Query: 90 RN 85
RN
Sbjct: 259 RN 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,879
Number of Sequences: 5004
Number of extensions: 53255
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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