Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d23
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 34 0.14
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697... 31 1.3
11_01_0464 + 3597568-3600244,3600345-3600742 30 1.7
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 30 1.7
04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326... 30 1.7
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 3.9
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466... 29 5.1
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 28 6.8
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 28 6.8
02_05_0612 + 30348495-30348995,30349679-30350023 28 6.8
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28... 28 9.0
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 33.9 bits (74), Expect = 0.14
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Frame = -1
Query: 609 KIDDLTQKLTVANADLA--EA-NRSLILFANEMIVARRDVETARQDCEXARRET-AQLAN 442
+ID+L KLT +AD+A EA N L+ A E A ++ T +D E A RE+ A+ A
Sbjct: 244 EIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRESAAREAA 303
Query: 441 RMAD 430
R+A+
Sbjct: 304 RVAE 307
>07_03_0006 +
12268852-12269146,12269362-12269487,12269536-12269753,
12269918-12270292,12270376-12270610,12270698-12270861
Length = 470
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = -1
Query: 372 VCDVGNNEFAFLRPQKRSLGRSLKRLGFNDVIFSSDYXPNSMNVXNKVKEAIPR------ 211
V D GNN F + P K L R ++ N + +V N++K AIP+
Sbjct: 285 VYDNGNNTFRTIFPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKL 344
Query: 210 -NKFKAKHNRITLLEDYTREELMNVI 136
++ A H ++ +L+ E ++VI
Sbjct: 345 TKRYDAAHLQVLVLDHSLIPESVDVI 370
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -1
Query: 405 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGFNDVIFSSDYXPNSMNVXNKVK 226
PS H+L V ++ N F+ + P +SL++L D F+ + N+ N V
Sbjct: 384 PSGLTNLHNLVVIELSGNRFSGVLPDWLGALKSLQKLTVGDNNFTGLIPSSLFNLTNLVH 443
Query: 225 EAIPRNKFKAK 193
+ NKF +
Sbjct: 444 LFLYSNKFSGQ 454
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 603 DDLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRETAQLANRMADI 427
DDLT+K+ VAN + + +L F + RQ E RRE + R+ ++
Sbjct: 1038 DDLTKKVEVANENFKQLKDTLKSFEESTKGLETSLMMERQQNEANRREVGEAQQRVEEL 1096
>04_01_0248 +
3254493-3254599,3258414-3258681,3260797-3261074,
3261708-3261711,3263037-3263118,3263196-3263220,
3263498-3263599,3264123-3264306,3264902-3265068,
3265233-3265866
Length = 616
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = -1
Query: 369 CDVGNNEFAFLRPQKRSLGRSLKRLGFNDVIFSSDYXPNSMNVXNKVKEAIPRNKFKAKH 190
C V F +L P + LGR K+LG+ D + Y + + + VK+ R
Sbjct: 341 CSVLTPCFTYLNPTNKQLGRLFKKLGYGDKGDTGCYSWD-ITIPELVKDTALRMVSDFDL 399
Query: 189 NRITLLEDYTREELMNV 139
N + LL + R E V
Sbjct: 400 NTMGLLRPHPRYERKEV 416
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 524 SLANKMSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYL 655
+L +SD LAS S+LA V +++ A+ S S S++ +Y+
Sbjct: 44 TLRASLSDLLASIPSSLALVGPAAAAAVAAVASSFSSSSSSSYV 87
>09_04_0162 +
15245354-15245458,15245558-15245629,15245793-15246617,
15247787-15248474,15248805-15248821
Length = 568
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = -1
Query: 729 SKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEAN 550
+KLP ++ W L++ ++ PA +++N ++ + + L+QK+ D ++
Sbjct: 410 TKLPEKYFIERWRLKDKNHELFVPNTLMPAAVLESNPLL-RFNILSQKMIKLALDASKTK 468
Query: 549 RSLILFANE 523
+ + NE
Sbjct: 469 ENFVYVMNE 477
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = -1
Query: 450 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGFNDVIFS 271
L ++M++++ + N C+S+ V D+ NN + RP + S + D +
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339
Query: 270 SD 265
D
Sbjct: 340 DD 341
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/104 (21%), Positives = 46/104 (44%)
Frame = -1
Query: 711 IELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILF 532
++L++ L+E V + CT K ++E+DT K+ D+ + ++ I
Sbjct: 688 LKLKDLLIEAVALKWSCTQKNMASIELDT------------KIWEMEKDVKKLEKNAIEA 735
Query: 531 ANEMIVARRDVETARQDCEXARRETAQLANRMADIAQDVIAKPS 400
A E +R + +Q A++ +A D+A+ + P+
Sbjct: 736 AKEYENCKRKTQEHKQQLSNAKQHAESIAMITEDLAKKFLEMPT 779
>02_05_0612 + 30348495-30348995,30349679-30350023
Length = 281
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 329 CGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 472
C R NA R W + +L +A+ + M A LA C+V R+
Sbjct: 231 CFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278
>10_01_0021 -
281130-281224,281758-281842,281916-281971,282408-282584,
282686-282805,283004-283096,283548-283668,283772-283804,
284001-284082,286600-286739
Length = 333
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 216 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 100
P N + HNR ++L++ L N G T RQ+ M
Sbjct: 99 PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,710,331
Number of Sequences: 37544
Number of extensions: 397409
Number of successful extensions: 1222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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