Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d23
         (741 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a prote...    29   8.8  
U42402-1|AAB02354.1|  906|Drosophila melanogaster stripe b prote...    29   8.8  
AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    29   8.8  
AE014297-2438|AAN13756.1|  906|Drosophila melanogaster CG7847-PB...    29   8.8  
AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA...    29   8.8  

>U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a protein
           protein.
          Length = 1180

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 235 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 71
           Q +     QQ Q Q QP H   +L  +   +  + HY +     H+Q  Q+A KI
Sbjct: 657 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 710


>U42402-1|AAB02354.1|  906|Drosophila melanogaster stripe b protein
           protein.
          Length = 906

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 235 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 71
           Q +     QQ Q Q QP H   +L  +   +  + HY +     H+Q  Q+A KI
Sbjct: 383 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 436


>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
           endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +2

Query: 449 SCAVSRRAXSQSCRAVSTSRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFV 628
           SC  +++    S RAVS +    +I     +SD  A A S +  ++  ++   LA   + 
Sbjct: 782 SCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYT 841

Query: 629 SI 634
            +
Sbjct: 842 QL 843


>AE014297-2438|AAN13756.1|  906|Drosophila melanogaster CG7847-PB,
           isoform B protein.
          Length = 906

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 235 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 71
           Q +     QQ Q Q QP H   +L  +   +  + HY +     H+Q  Q+A KI
Sbjct: 383 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 436


>AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA,
           isoform A protein.
          Length = 1186

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 235 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 71
           Q +     QQ Q Q QP H   +L  +   +  + HY +     H+Q  Q+A KI
Sbjct: 663 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 716


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,468,896
Number of Sequences: 53049
Number of extensions: 658353
Number of successful extensions: 2614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2607
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)