Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d23
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 34 0.092
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 34 0.092
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 34 0.092
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 34 0.092
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 34 0.092
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 34 0.092
Z69383-10|CAM06587.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.65
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 30 1.5
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 30 1.5
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 4.6
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 29 4.6
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 648 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVE 496
A + N +I KIDD T +L + +ADL +A + NE A+ D +
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 648 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVE 496
A + N +I KIDD T +L + +ADL +A + NE A+ D +
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4226
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 648 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVE 496
A + N +I KIDD T +L + +ADL +A + NE A+ D +
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 648 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVE 496
A + N +I KIDD T +L + +ADL +A + NE A+ D +
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 648 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVE 496
A + N +I KIDD T +L + +ADL +A + NE A+ D +
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4226
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 648 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVE 496
A + N +I KIDD T +L + +ADL +A + NE A+ D +
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>Z69383-10|CAM06587.1| 222|Caenorhabditis elegans Hypothetical
protein F13E9.14 protein.
Length = 222
Score = 31.5 bits (68), Expect = 0.65
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -1
Query: 627 TNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRD--VETARQDCEXARRETA 454
T +V AK+++L Q +T +L+ SL E I+ D V +Q E R+E
Sbjct: 124 TANVTAKLEELKQNVTSVLTNLSSVLNSL-----ETILENEDQTVAAQKQAIEELRQENP 178
Query: 453 QLANRMADIAQDVIAKP 403
+ + + IAQ+V KP
Sbjct: 179 EEVDALFFIAQEVAPKP 195
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -1
Query: 606 IDDLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRETAQLANRMADI 427
+D+ +K A++ ++ R A E R +E + + E +RE LA + DI
Sbjct: 1463 LDEWRRKCEALVAEVEQSQRETRAAATETFRLRNQLEESGEQTEAVKRENKALAQELKDI 1522
Query: 426 AQDV 415
A +
Sbjct: 1523 ADQL 1526
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/165 (19%), Positives = 71/165 (43%), Gaps = 2/165 (1%)
Frame = -1
Query: 639 VEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRE 460
+E+++ D + + Q+L +LAE L NE+ + + +D + AR E
Sbjct: 2912 IEVESWDKL--VQHAMQRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREE 2969
Query: 459 TAQLANRMADIA--QDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGFN 286
T Q++ R+ ++ D + + L L + + + + + +L R+++
Sbjct: 2970 TDQISKRIDEVRLFVDDVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAA 3029
Query: 285 DVIFSSDYXPNSMNVXNKVKEAIPRNKFKAKHNRITLLEDYTREE 151
+SD+ P S + N+ +P + +K N + + T E+
Sbjct: 3030 VRNAASDFGPTSEHFLNQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/165 (19%), Positives = 71/165 (43%), Gaps = 2/165 (1%)
Frame = -1
Query: 639 VEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRE 460
+E+++ D + + Q+L +LAE L NE+ + + +D + AR E
Sbjct: 2912 IEVESWDKL--VQHAMQRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREE 2969
Query: 459 TAQLANRMADIA--QDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGFN 286
T Q++ R+ ++ D + + L L + + + + + +L R+++
Sbjct: 2970 TDQISKRIDEVRLFVDDVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAA 3029
Query: 285 DVIFSSDYXPNSMNVXNKVKEAIPRNKFKAKHNRITLLEDYTREE 151
+SD+ P S + N+ +P + +K N + + T E+
Sbjct: 3030 VRNAASDFGPTSEHFLNQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/165 (19%), Positives = 71/165 (43%), Gaps = 2/165 (1%)
Frame = -1
Query: 639 VEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRE 460
+E+++ D + + Q+L +LAE L NE+ + + +D + AR E
Sbjct: 2912 IEVESWDKL--VQHAMQRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREE 2969
Query: 459 TAQLANRMADIA--QDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGFN 286
T Q++ R+ ++ D + + L L + + + + + +L R+++
Sbjct: 2970 TDQISKRIDEVRLFVDDVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAA 3029
Query: 285 DVIFSSDYXPNSMNVXNKVKEAIPRNKFKAKHNRITLLEDYTREE 151
+SD+ P S + N+ +P + +K N + + T E+
Sbjct: 3030 VRNAASDFGPTSEHFLNQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = -1
Query: 600 DLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRETAQLANRMADIAQ 421
DL +++ A + ANR + F+NE+ A+R E ++ + + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 420 DV 415
+
Sbjct: 1362 SI 1363
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = -1
Query: 600 DLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRETAQLANRMADIAQ 421
DL +++ A + ANR + F+NE+ A+R E ++ + + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 420 DV 415
+
Sbjct: 1362 SI 1363
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = -1
Query: 600 DLTQKLTVANADLAEANRSLILFANEMIVARRDVETARQDCEXARRETAQLANRMADIAQ 421
DL +++ A + ANR + F+NE+ A+R E ++ + + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 420 DV 415
+
Sbjct: 1362 SI 1363
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 210 NKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNSLR 88
N + + LL YT EEL+ V G + D QIA +R
Sbjct: 523 NYDQKRRQNFGLLRYYTLEELIEVFGLLLPDVQIAMRRGVR 563
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,296,488
Number of Sequences: 27780
Number of extensions: 321606
Number of successful extensions: 905
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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