Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d22
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   2.7  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   6.3  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   6.3  

>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 324 WNKSVFYVNTNKKTEA--DSLQKLCADFNQISMLLED-NLIKVTIYVTVEN 181
           W KS+F+    K TE   DS   + ++    S L+ED NL  +   V +E+
Sbjct: 513 WGKSIFFEKLKKPTETFMDSKTDIPSEAPDNSKLVEDTNLHTINATVNIES 563


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -1

Query: 768 VVQVECFVNAKTLMNLFKNNIKGSDDINEVFKYLKDNENQIFTIYNIKCQQIFNGA 601
           V  +E F +     + F   + G +    V +Y  +N N      N+ C  + NGA
Sbjct: 260 VYSIEGFSSKSASDSFFVRRLNGEEQKISVAEYFLENHNVRLQYPNLPCILVKNGA 315


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -1

Query: 696 DDINEVFKYLKDNENQIFTIYNIKCQQIFNGANVYMNWNVVNSTRIELCEAKENEAYSNL 517
           DD++E  K+    +  +  IYN +  +         N N+++  R++  E + ++   NL
Sbjct: 192 DDLHESAKHEMQLKLTMLNIYNSRLTRRAVRKQTIFNHNLLDYRRLQANEKRMSKEERNL 251

Query: 516 QNCTNA 499
            N T A
Sbjct: 252 LNKTKA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,235
Number of Sequences: 5004
Number of extensions: 67088
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)