Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d22
         (891 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-161|AAF47434.1|  841|Drosophila melanogaster CG13908-PA...    31   2.8  
AY061381-1|AAL28929.1| 1071|Drosophila melanogaster LD30416p pro...    29   6.5  
AE014134-3335|AAF53958.1|  982|Drosophila melanogaster CG12050-P...    29   6.5  
AY061453-1|AAL29001.1|  985|Drosophila melanogaster LD39136p pro...    29   8.6  
AE013599-1040|AAF58831.2|  985|Drosophila melanogaster CG18011-P...    29   8.6  

>AE014296-161|AAF47434.1|  841|Drosophila melanogaster CG13908-PA
           protein.
          Length = 841

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
 Frame = -1

Query: 723 LFKNNIKGSDDINEVFKYLKDNENQIFTIYNIKCQQIFNGANVYMNWNVVNSTRIELCEA 544
           L K +   SD +N    Y     N +   Y    QQ    AN   N N  N+   +  E 
Sbjct: 537 LSKGDATASDILNNSKNYPFQPSNALEFQYKNNFQQGQANAN-NNNTNTTNTASSDAAEC 595

Query: 543 KEN----EAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFI 397
            +N       +NL   +  +++ +  N   +S N+N++ S   E + ++ KFI
Sbjct: 596 FQNYRAISKETNLNQTSTEQLSPTNINLSTSSNNINIVFSSSLERNANEVKFI 648


>AY061381-1|AAL28929.1| 1071|Drosophila melanogaster LD30416p
           protein.
          Length = 1071

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 534 EAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQFKSDDLNVA 364
           E Y++L N    R+     N+R+ SY +N       EN      F  QF+ D+L  A
Sbjct: 413 EVYNDLVNFAEVRLKFWHYNERLQSYILNTEIELPHENGFKAIIFSNQFQVDNLRCA 469


>AE014134-3335|AAF53958.1|  982|Drosophila melanogaster CG12050-PA
           protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 534 EAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQFKSDDLNVA 364
           E Y++L N    R+     N+R+ SY +N       EN      F  QF+ D+L  A
Sbjct: 413 EVYNDLVNFAEVRLKFWHYNERLQSYILNTEIELPHENGFKAIIFSNQFQVDNLRCA 469


>AY061453-1|AAL29001.1|  985|Drosophila melanogaster LD39136p
           protein.
          Length = 985

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
 Frame = -1

Query: 693 DINEVFKYLKDNENQIFTIYNIKCQQIFNGANVYMNWNV----VNSTRIELCEAKEN-EA 529
           +I+E+F++L  +   + T++   C + F   +V+M  N     V+ST     E   N E+
Sbjct: 468 NIDELFQHLNYSHEPVGTLFCDLCDRTFRDPSVFMEHNKSHANVSSTTYSCSECMANFES 527

Query: 528 YSNLQNCTNARIN-------ISRSNKRVASYNVNMLKSELEENDM 415
              L     A           SR     A+YN++M K  + E D+
Sbjct: 528 RGRLNGHMRAMHGSVISCELCSREFATEATYNIHMKKHLIIEKDV 572


>AE013599-1040|AAF58831.2|  985|Drosophila melanogaster CG18011-PA
           protein.
          Length = 985

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
 Frame = -1

Query: 693 DINEVFKYLKDNENQIFTIYNIKCQQIFNGANVYMNWNV----VNSTRIELCEAKEN-EA 529
           +I+E+F++L  +   + T++   C + F   +V+M  N     V+ST     E   N E+
Sbjct: 468 NIDELFQHLNYSHEPVGTLFCDLCDRTFRDPSVFMEHNKSHANVSSTTYSCSECMANFES 527

Query: 528 YSNLQNCTNARIN-------ISRSNKRVASYNVNMLKSELEENDM 415
              L     A           SR     A+YN++M K  + E D+
Sbjct: 528 RGRLNGHMRAMHGSVISCELCSREFATEATYNIHMKKHLIIEKDV 572


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,893,439
Number of Sequences: 53049
Number of extensions: 668085
Number of successful extensions: 1935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1935
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4352837424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)