Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d19
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    31   0.14 
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    29   0.56 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   1.3  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    28   1.3  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    27   2.3  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    27   2.3  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    27   2.3  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    27   2.3  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   9.2  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   9.2  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   9.2  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 325 SIAISSNGIVPINMPDFSPSNNAFDYSDYVNRTNINFVTQRVLI 194
           S+ I+    +P+++P +SP  N+FD SD  + T+     +  L+
Sbjct: 265 SVVITDENYLPVSLPVYSPVLNSFDDSDSYSSTDSELSEEAFLL 308


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 718 ILSLKRIFCIFQYRKQPARYVINLPHEEIDNLYNKLNWERTRRL 587
           ++S      +F+Y     +YV+ L  +E++N+Y   N +  +R+
Sbjct: 320 VISTLESLSVFKYDPLKKKYVLQLKRDELENVYKAWNIKHPQRV 363


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 628 NLYNKLNWERTRRLMKGDVPSNCATVNRSSLKYIKQAQSL 509
           NL+ K ++ + RRL   D PS   T N    +   QA  +
Sbjct: 580 NLFRKNSFPKRRRLSNSDTPSETTTPNNEQEQVSNQANKV 619


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 740 GNVHHGEDIVVETHFLHLSISQTARAL 660
           GN+HH  D   ET  +HL+IS  A A+
Sbjct: 195 GNLHHAGDHEEETVHIHLTISLFASAI 221


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +2

Query: 515 LCLFNVFETGAVYCSAIGWHVALHKPARSLPIQFVVQIINFLVRQIDYIARGL 673
           +CLF +   G +YCS I   V    P  S+ I  VV II   + +I YI   L
Sbjct: 128 ICLFVLLLLGLIYCSKI---VVKAIPLISIVIAAVVVIIAVAMVKILYICHWL 177


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 587 KPARSLPIQFVVQIINFLVRQID-YIARGLFAILKDAKNAFQRQYLHHGG 733
           KP    P  F+  I+N  +  ID  I   L  +L++ +  +  +++H+GG
Sbjct: 101 KPCYEQPDDFISYIVNTKIDSIDESIIHKLALLLRNEQVIWVEKFIHNGG 150


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +2

Query: 515 LCLFNVFETGAVYCSAIGWHVALHKPARSLPIQFVVQIINFLVRQIDYIARGL 673
           +CLF +   G +YCS I   V    P  S+ I  VV II   + +I YI   L
Sbjct: 128 ICLFILLLLGLIYCSKI---VVKAIPLISIVIAAVVVIIAVAMVKILYICHWL 177


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +2

Query: 515 LCLFNVFETGAVYCSAIGWHVALHKPARSLPIQFVVQIINFLVRQIDYIARGL 673
           +CLF +   G +YCS I   V    P  S+ I  VV II   + +I YI   L
Sbjct: 128 ICLFVLLLLGLIYCSKI---VVKAIPLISIVIAAVVVIIAVAMVKILYICHWL 177


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 358 YKKIRLFCKNDSIAISSNGIVPINMPDFSPSNNAFDYSD 242
           Y+K   F  +DS A+ SN ++  +    + SNN+ D+ D
Sbjct: 259 YRKNCHFEVHDSDALLSNQLLSADKHQLAASNNSQDFED 297


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 412 KLNNFDQI-MSVAPNKAESYKKIRLFCKNDSIAISSN 305
           KL+ FD+I  S AP      +K R FCK + I +SSN
Sbjct: 319 KLHYFDEIGYSHAP-LLHCPRKGRCFCKPEEIDLSSN 354


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 760 FLLCFNLETSTMVKILSLK-RIFCIF 686
           FLL F L T+  ++ILSL    FC+F
Sbjct: 23  FLLTFFLLTTCQLRILSLSINAFCVF 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,620
Number of Sequences: 5004
Number of extensions: 67536
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)