Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d19
(778 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT023387-1|AAY55803.2| 391|Drosophila melanogaster IP10444p pro... 31 2.3
BT023327-1|AAY55743.1| 399|Drosophila melanogaster IP10544p pro... 31 2.3
BT010245-1|AAQ23563.1| 297|Drosophila melanogaster RE40745p pro... 29 7.1
AY119115-1|AAM50975.1| 715|Drosophila melanogaster RE15579p pro... 29 7.1
AF212322-1|AAF24495.1| 601|Drosophila melanogaster SP71 protein. 29 7.1
AE014298-2|ABC67158.1| 715|Drosophila melanogaster CG17131-PB, ... 29 7.1
AE014298-1|AAZ52488.1| 715|Drosophila melanogaster CG17131-PA, ... 29 7.1
AE013599-1388|AAF58589.1| 297|Drosophila melanogaster CG8357-PA... 29 7.1
AY121640-1|AAM51967.1| 949|Drosophila melanogaster LD04710p pro... 29 9.4
AE014296-2938|AAF49321.2| 949|Drosophila melanogaster CG7510-PA... 29 9.4
>BT023387-1|AAY55803.2| 391|Drosophila melanogaster IP10444p
protein.
Length = 391
Score = 30.7 bits (66), Expect = 2.3
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 301 IVPINMPDFSPSNNAFDYS--DYVNRTNINFVTQRVLIDGGFSSGVTVTPIKY 149
IV + F +N D S Y++ TN + Q DG SSG TV P Y
Sbjct: 16 IVSVRAMSFDQPHNEHDASLASYLDNTNDDISPQGFNGDGNGSSGATVVPFPY 68
>BT023327-1|AAY55743.1| 399|Drosophila melanogaster IP10544p
protein.
Length = 399
Score = 30.7 bits (66), Expect = 2.3
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 301 IVPINMPDFSPSNNAFDYS--DYVNRTNINFVTQRVLIDGGFSSGVTVTPIKY 149
IV + F +N D S Y++ TN + Q DG SSG TV P Y
Sbjct: 24 IVSVRAMSFDQPHNEHDASLASYLDNTNDDISPQGFNGDGNGSSGATVVPFPY 76
>BT010245-1|AAQ23563.1| 297|Drosophila melanogaster RE40745p
protein.
Length = 297
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 452 FLEHFDKVHNRLAIVGNAEQRLCLFNVFETGAVYCS 559
F+E L NAE RL L + + GA++CS
Sbjct: 169 FMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGAIFCS 204
>AY119115-1|AAM50975.1| 715|Drosophila melanogaster RE15579p
protein.
Length = 715
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 325 CRF-CKT-AEFFCRTLLYLAQPTLSGQSCSI 411
CR C+ +EF CR+ LYL QP S +C +
Sbjct: 260 CRLACEIESEFLCRSFLYLGQPQGSQYNCRL 290
>AF212322-1|AAF24495.1| 601|Drosophila melanogaster SP71 protein.
Length = 601
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 325 CRF-CKT-AEFFCRTLLYLAQPTLSGQSCSI 411
CR C+ +EF CR+ LYL QP S +C +
Sbjct: 146 CRLACEIESEFLCRSFLYLGQPQGSQYNCRL 176
>AE014298-2|ABC67158.1| 715|Drosophila melanogaster CG17131-PB,
isoform B protein.
Length = 715
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 325 CRF-CKT-AEFFCRTLLYLAQPTLSGQSCSI 411
CR C+ +EF CR+ LYL QP S +C +
Sbjct: 260 CRLACEIESEFLCRSFLYLGQPQGSQYNCRL 290
>AE014298-1|AAZ52488.1| 715|Drosophila melanogaster CG17131-PA,
isoform A protein.
Length = 715
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 325 CRF-CKT-AEFFCRTLLYLAQPTLSGQSCSI 411
CR C+ +EF CR+ LYL QP S +C +
Sbjct: 260 CRLACEIESEFLCRSFLYLGQPQGSQYNCRL 290
>AE013599-1388|AAF58589.1| 297|Drosophila melanogaster CG8357-PA
protein.
Length = 297
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 452 FLEHFDKVHNRLAIVGNAEQRLCLFNVFETGAVYCS 559
F+E L NAE RL L + + GA++CS
Sbjct: 169 FMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGAIFCS 204
>AY121640-1|AAM51967.1| 949|Drosophila melanogaster LD04710p
protein.
Length = 949
Score = 28.7 bits (61), Expect = 9.4
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 557 SAIGWHVALHKPARSLPIQFVVQIINFLV-RQIDYIARGLFAILKDAKNAFQRQY 718
SA+ W L + F V II+ LV R ++Y GL AI N F Y
Sbjct: 104 SAVNWSFLLAMLVSKAVVFFAVLIISLLVARPLNYARGGLMAIFCTQSNDFAIGY 158
>AE014296-2938|AAF49321.2| 949|Drosophila melanogaster CG7510-PA
protein.
Length = 949
Score = 28.7 bits (61), Expect = 9.4
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 557 SAIGWHVALHKPARSLPIQFVVQIINFLV-RQIDYIARGLFAILKDAKNAFQRQY 718
SA+ W L + F V II+ LV R ++Y GL AI N F Y
Sbjct: 104 SAVNWSFLLAMLVSKAVVFFAVLIISLLVARPLNYARGGLMAIFCTQSNDFAIGY 158
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,149,279
Number of Sequences: 53049
Number of extensions: 743780
Number of successful extensions: 1661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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