Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d16
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    29   1.1  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   5.8  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 776 WNLYVQLKEMRRNIYIKRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVV 624
           W     LK +R    +K+R     A Y   C++  CL+EE   N  LLE V
Sbjct: 541 WKPMPDLKVVRSRPSLKQRP-LRSAEYVRVCELK-CLQEEEFDNKVLLEQV 589


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -1

Query: 791 LAVQCWNLYVQLKEMRRNIYIKRRAEAEKASYDHYCDIDYC 669
           + +Q  N ++QL+  + N Y+++R+      +  + D ++C
Sbjct: 139 MRIQLANRHIQLRAPKYNSYLRQRSRLAYQVHSFFNDREFC 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,069
Number of Sequences: 5004
Number of extensions: 40660
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)