Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d16
(845 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY075556-1|AAL68363.1| 113|Drosophila melanogaster RH61745p pro... 33 0.65
AE014298-2540|AAF48710.2| 113|Drosophila melanogaster CG12998-P... 33 0.65
X71974-1|CAA50794.1| 196|Drosophila melanogaster GCR 17 protein. 30 4.6
AY118420-1|AAM48449.1| 250|Drosophila melanogaster RE74758p pro... 30 4.6
AY071088-1|AAL48710.1| 173|Drosophila melanogaster RE15531p pro... 30 4.6
AE014298-2545|AAF48713.1| 173|Drosophila melanogaster CG10598-P... 30 4.6
AE014298-2544|AAN09437.1| 230|Drosophila melanogaster CG10598-P... 30 4.6
AE014296-1850|AAF50135.2| 250|Drosophila melanogaster CG12523-P... 30 4.6
U49724-1|AAB08449.1| 635|Drosophila melanogaster merlin protein. 29 6.1
AY094998-1|AAM11326.1| 635|Drosophila melanogaster GH01330p pro... 29 6.1
AE014298-2915|AAF49005.1| 635|Drosophila melanogaster CG14228-P... 29 6.1
>AY075556-1|AAL68363.1| 113|Drosophila melanogaster RH61745p
protein.
Length = 113
Score = 32.7 bits (71), Expect = 0.65
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 156 WSGN-GWSGNVCSGNGWSGRFYGCSGNGWS 242
W GN GW GN +GWS G + NGWS
Sbjct: 79 WGGNSGWGGN----SGWSSGNSGWNSNGWS 104
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +3
Query: 156 WSGN-GWSGNVC--SGNGWSGRFYGCSGN-GWS 242
W GN GW GN S +GW G G GN GWS
Sbjct: 61 WGGNSGWGGNSGWGSNSGWGGN-SGWGGNSGWS 92
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
G G+GW GN +GW G S +GW G
Sbjct: 54 GGGGGSGWGGN----SGWGGNSGWGSNSGWGG 81
>AE014298-2540|AAF48710.2| 113|Drosophila melanogaster CG12998-PA
protein.
Length = 113
Score = 32.7 bits (71), Expect = 0.65
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 156 WSGN-GWSGNVCSGNGWSGRFYGCSGNGWS 242
W GN GW GN +GWS G + NGWS
Sbjct: 79 WGGNSGWGGN----SGWSSGNSGWNSNGWS 104
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +3
Query: 156 WSGN-GWSGNVC--SGNGWSGRFYGCSGN-GWS 242
W GN GW GN S +GW G G GN GWS
Sbjct: 61 WGGNSGWGGNSGWGSNSGWGGN-SGWGGNSGWS 92
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
G G+GW GN +GW G S +GW G
Sbjct: 54 GGGGGSGWGGN----SGWGGNSGWGSNSGWGG 81
>X71974-1|CAA50794.1| 196|Drosophila melanogaster GCR 17 protein.
Length = 196
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 132 LFAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
L K G G G+SG +G G+SG G G+SG
Sbjct: 69 LGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSG 106
>AY118420-1|AAM48449.1| 250|Drosophila melanogaster RE74758p
protein.
Length = 250
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 144 THGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
++G S GWS S GWS G S GW+ +
Sbjct: 213 SYGAPSSGGWSSGGASNGGWSAG--GSSSGGWASQ 245
>AY071088-1|AAL48710.1| 173|Drosophila melanogaster RE15531p
protein.
Length = 173
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 132 LFAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
L K G G G+SG +G G+SG G G+SG
Sbjct: 69 LGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSG 106
>AE014298-2545|AAF48713.1| 173|Drosophila melanogaster CG10598-PA,
isoform A protein.
Length = 173
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 132 LFAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
L K G G G+SG +G G+SG G G+SG
Sbjct: 69 LGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSG 106
>AE014298-2544|AAN09437.1| 230|Drosophila melanogaster CG10598-PB,
isoform B protein.
Length = 230
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 132 LFAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
L K G G G+SG +G G+SG G G+SG
Sbjct: 126 LGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSG 163
>AE014296-1850|AAF50135.2| 250|Drosophila melanogaster CG12523-PA
protein.
Length = 250
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 144 THGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
++G S GWS S GWS G S GW+ +
Sbjct: 213 SYGAPSSGGWSSGGASNGGWSAG--GSSSGGWASQ 245
>U49724-1|AAB08449.1| 635|Drosophila melanogaster merlin protein.
Length = 635
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 728 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 600
KR AE EK + C ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478
>AY094998-1|AAM11326.1| 635|Drosophila melanogaster GH01330p
protein.
Length = 635
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 728 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 600
KR AE EK + C ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478
>AE014298-2915|AAF49005.1| 635|Drosophila melanogaster CG14228-PA
protein.
Length = 635
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 728 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 600
KR AE EK + C ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,753,799
Number of Sequences: 53049
Number of extensions: 511861
Number of successful extensions: 2090
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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