Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d16
(845 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.45
AF125460-2|AAD12846.1| 151|Caenorhabditis elegans Hypothetical ... 32 0.59
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 31 0.78
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 1.8
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 30 2.4
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 5.5
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 28 7.3
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 28 7.3
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 28 9.6
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 28 9.6
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 28 9.6
U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-li... 28 9.6
U28731-8|AAA68300.2| 113|Caenorhabditis elegans Hypothetical pr... 28 9.6
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 28 9.6
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 28 9.6
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 28 9.6
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 28 9.6
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
G W GNG GN G G G G G G GR
Sbjct: 79 GNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGR 111
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Frame = +3
Query: 150 GRWSGNG----WSGNVCSGNGWSGRFYGCSGNGWSG 245
G W NG W GN GNG GR G G G G
Sbjct: 70 GGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRG 105
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
G G GW N GN W G G GNG GR
Sbjct: 65 GGGRGGGWGNNGGGGN-WGGN--GGGGNGGGGR 94
>AF125460-2|AAD12846.1| 151|Caenorhabditis elegans Hypothetical
protein Y9D1A.2 protein.
Length = 151
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 156 WSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
W G+GW G G+GW G G+GW G
Sbjct: 3 WDGSGWIGMDRDGSGWIG--MDRDGSGWIG 30
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 162 GNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
G+GW G G+GW G + G GW G
Sbjct: 25 GSGWIGTDRDGSGWMGTDW--DGLGWIG 50
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 31.5 bits (68), Expect = 0.78
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = +3
Query: 147 HGRWSGNG---WSGN-VCSGNGWSGRFYGCSGNGWSG 245
+G W GNG W N G+ W G G G GW G
Sbjct: 690 NGGWGGNGGGGWGNNDPWGGSRWGGGRGGWGGGGWGG 726
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNG-WSGRFYGCSGNGWSG 245
G W GNG G G G W G G GN W G
Sbjct: 86 GDWGGNGGGGRGGGGRGDWGGNNNGGGGN-WGG 117
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGW 239
GRW G W GN G G G + G GW
Sbjct: 30 GRWGG--WGGNRWGGGGGPGGWGNNGGGGW 57
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Frame = +3
Query: 150 GRWSGNG-----WSGNVCSGNGWSGR-FYGCSGNGWSGRF 251
G W GNG W GN G G GR +G + NG G +
Sbjct: 76 GNWGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNW 115
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Frame = +3
Query: 153 RWSGNGWSGNVCSGNGWSGRFYGCSG--NGW 239
+W GW G GW G +G G GW
Sbjct: 19 QWGPGGWGGGPGRWGGWGGNRWGGGGGPGGW 49
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 386 KLSWARCTPAWARYMCCQN---RTRCGCRTETMDVEMAMAVKSSPKAR*KTKVFL 541
K++ R + A RY C N +T CG V + AV PKA + K+FL
Sbjct: 357 KVALRRDSVATKRYCLCYNIQLQTNCGIELVGKKVSLPFAVLVGPKADVEAKLFL 411
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 386 KLSWARCTPAWARYMCCQN---RTRCGCRTETMDVEMAMAVKSSPKAR*KTKVFL 541
K++ R + A RY C N +T CG V + AV PKA + K+FL
Sbjct: 357 KVALRRDSVATKRYCLCYNIQLQTNCGIELVGKKVSLPFAVLVGPKADVEAKLFL 411
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 386 KLSWARCTPAWARYMCCQN---RTRCGCRTETMDVEMAMAVKSSPKAR*KTKVFL 541
K++ R + A RY C N +T CG V + AV PKA + K+FL
Sbjct: 403 KVALRRDSVATKRYCLCYNIQLQTNCGIELVGKKVSLPFAVLVGPKADVEAKLFL 457
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNGWSGRFYGCSGNG 236
G W+ G G NGW+ G +GNG
Sbjct: 43 GEWNNGGGRGGFGGNNGWNNGGGGFNGNG 71
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 245
G G G G+ GW G+ G S GW G
Sbjct: 76 GGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGG 107
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +3
Query: 150 GRWSGNGWSGNVCSGNGWSGRFYGCSGNG 236
G +GN SGN SGNG +G G SGNG
Sbjct: 227 GSGNGNSNSGNGNSGNG-NGNNAGNSGNG 254
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 451 TSSILATHIACPSRCTTCPRKFCVPHRTRAQCASLRCRTKKSLVGARQRFR-PNC 290
TSS L A +C C RKF R + CR +S V +FR NC
Sbjct: 15 TSSTLDQDSAKVPQCQVCKRKFANQKTLRTHMKHITCRPGRSNV-VNHKFRCENC 68
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
protein F36H2.3 protein.
Length = 1388
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 87 LIING*FSLFKFTLQLFAKTHGRWSGNGWSGNVCSGNGW 203
L N ++F + H ++GNG S VC+ NGW
Sbjct: 205 LYSNDQLNVFSIGTSATLECHQGFAGNGPSSLVCTKNGW 243
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 135 FAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
+AK H RW W+ ++ S +G GN W R
Sbjct: 68 WAKAHLRWGRQEWAKHIWSDES-KFNLFGSDGNSWVRR 104
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 135 FAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
+AK H RW W+ ++ S +G GN W R
Sbjct: 109 WAKAHLRWGRQEWAKHIWSDES-KFNLFGSDGNSWLRR 145
>U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-like
protein protein32 protein.
Length = 105
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 KTHGRWSGNG-WSGNVCSGNGWSGRFYGCSGNGW 239
K +G W G G W G G G +G G GW
Sbjct: 53 KRYGGWGGRGGWGRGGGRGYGGRGGGWGGRGGGW 86
>U28731-8|AAA68300.2| 113|Caenorhabditis elegans Hypothetical
protein F12A10.7 protein.
Length = 113
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 KTHGRWSGN-GWSGNVCSGNGWSGRFYGCSGNGWSGRF 251
K +G W G + G G G+ G + G G G+ GR+
Sbjct: 48 KRYGGWGGGYPYGGYGGYGGGYGGGYGGGYGGGYGGRY 85
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 135 FAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
+AK H RW W+ ++ S +G GN W R
Sbjct: 138 WAKAHLRWGRQEWAKHIWSDES-KFNLFGSDGNSWVRR 174
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 135 FAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
+AK H RW W+ ++ S +G GN W R
Sbjct: 68 WAKAHLRWGRQEWAKHIWSDES-KFNLFGSDGNSWVRR 104
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 135 FAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
+AK H RW W+ ++ S +G GN W R
Sbjct: 68 WAKAHLRWGRQEWAKHIWSDES-KFNLFGSDGNSWVRR 104
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 135 FAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 248
+AK H RW W+ ++ S +G GN W R
Sbjct: 138 WAKAHLRWGRQEWAKHIWSDES-KFNLFGSDGNSWVRR 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,183,943
Number of Sequences: 27780
Number of extensions: 252006
Number of successful extensions: 1041
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -