Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d15
(355 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa... 74 6e-15
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc... 74 6e-15
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 0.64
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 2.0
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 26 2.0
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 4.5
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 24 6.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 24 6.0
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 24 7.9
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 24 7.9
>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 6e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = -3
Query: 278 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 132
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 3|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 6e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = -3
Query: 278 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 132
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 0.64
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 205 SSSLGRPAVRSSET*KDPSVTETSSLFLNLNVKL 104
++S+ PAV SSET S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 2.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -2
Query: 261 CRESAWPYWFSGPVYSSEGRVHWGDQPSDHQK 166
C+ + WPY+ S P +E V+ + + ++K
Sbjct: 172 CKWNCWPYYTSSPTSDAEDLVYIQNSKATNKK 203
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 248 ALSRHEQERWVYPFWLVISSLMQLTHVHQSWRVSK 352
A+S+ RWVYPF + S+L+ T +Q ++ K
Sbjct: 282 AISKDVLSRWVYPF-VPDSNLLNQTFSYQRHQIYK 315
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = -3
Query: 293 AKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 180
A +D+P + ++V+ + T + CT+VK+ + ++
Sbjct: 121 ALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 223 WP*EPVRPSTFTTRARTLGLSILACNIE 306
WP +P + +G+SI+AC IE
Sbjct: 498 WPGDPTFRKSNDVCIALIGVSIIACGIE 525
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 144 VTDGSFHVSDDLTAGLPNELDLHLSTLAL 230
+T+G D+++ PN DL LS+LAL
Sbjct: 435 ITEGVNPTLDEVSKFNPNNEDLDLSSLAL 463
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 23.8 bits (49), Expect = 7.9
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -2
Query: 264 SCRESAWPYWF 232
+C E WPYW+
Sbjct: 824 ACVEKTWPYWW 834
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +2
Query: 260 HEQERWVYPFWLVISSLMQLTHVHQSWRVS 349
H ++ P W+ IS ++ Q W S
Sbjct: 76 HGDNAYLLPAWIAISCFQTAAYIVQDWITS 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,106
Number of Sequences: 5004
Number of extensions: 24453
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -