Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d13
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 124 3e-30
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 122 8e-30
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 28 0.32
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 0.97
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 1.3
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 1.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 1.3
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 1.7
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 2.2
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 3.0
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 24 3.9
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 3.9
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 24 5.2
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 23 6.9
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 23 6.9
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 9.1
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 23 9.1
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 9.1
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 9.1
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 124 bits (299), Expect = 3e-30
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 2/87 (2%)
Frame = -1
Query: 255 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 82
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 81 RCKRTVAGGAWVFSTTAASSCRSAVRR 1
CK+ +AGGAW +T AA+S RS +RR
Sbjct: 61 GCKKVLAGGAWTVTTAAATSARSTIRR 87
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 122 bits (295), Expect = 8e-30
Identities = 53/87 (60%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = -1
Query: 255 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 82
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 81 RCKRTVAGGAWVFSTTAASSCRSAVRR 1
C +T+AGGAW +T AA+S RS +RR
Sbjct: 61 GCSKTLAGGAWTVTTAAATSARSTIRR 87
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 0.32
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 62 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 169
+T +L ++ Q+ T F+A + +NE +FA W TS
Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 0.97
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 159 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 70
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 1.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -1
Query: 150 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 61
KY C CG + C I S RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 1.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 172 LFDHFT*RGTVTCAIFASNSNLFGT 246
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 1.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 207 VCHICQ*FQPFWYVWPF 257
+ ++ Q FQ WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 1.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 124 GCYETFLCRHLVL*AMQEDCSRRSLGILH 38
G + +LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 68 VLLHRLQDQMPTQERFIASLPQNEQV 145
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 170 IFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 268
I L I + P Y+P++P L RL L N+
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERLKSLQNM 285
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 3.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 275 YRRGLPKWPNVPKRLELL 222
YR+ LP P++P R+E L
Sbjct: 427 YRKRLPHSPSMPSRVEFL 444
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 3.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 110 RFIASLPQNEQVYFA 154
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 5.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 268 EVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLL 137
EV ++GQ Y + W + T ++T + +P R VYL+
Sbjct: 178 EVIRDGQEYNVMADIWSLGITAYEIATGSPPHAKEDPFRAVYLI 221
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 157
Score = 23.4 bits (48), Expect = 6.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 96 IWSCKRCKRT 67
IW+CK C++T
Sbjct: 65 IWTCKNCRKT 74
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 107 ERFIASLPQNEQVYFA 154
ERF ++PQ++QV FA
Sbjct: 273 ERFAVAVPQSKQVSFA 288
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 256 NGQTYQKGWNYWQIW 212
NG T Q G+ WQ W
Sbjct: 656 NGNTSQSGFMAWQRW 670
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 23.0 bits (47), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 146 YFACWVTSIFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 268
YF WV S ++R E R + I T++ A+L+ L
Sbjct: 202 YFVYWVISFPFHLIRPEYLQRFFLIKSISTYIACFAMLIFL 242
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 217 FASNSNLFGTFGHFGKPL 270
FA+N LFG HF + L
Sbjct: 149 FATNEKLFGVKSHFDEDL 166
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 98 PTQERFIASLPQNEQVYFACWVTSIFLTI 184
P Q +F+ +NE +Y A TSIF ++
Sbjct: 253 PCQLKFLKLKFENEILYTAMHTTSIFKSV 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,919
Number of Sequences: 5004
Number of extensions: 26478
Number of successful extensions: 76
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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