Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d13
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 126 4e-30
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 124 9e-30
07_01_0385 - 2871628-2872131 28 1.4
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 1.9
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 27 1.9
07_03_1237 + 25073010-25073513 27 3.3
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 4.4
02_01_0679 - 5048653-5051394 26 4.4
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 26 5.8
07_03_0039 - 12718972-12720699 26 5.8
03_05_1144 + 30719953-30720456 25 7.7
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776 25 7.7
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 25 7.7
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 126 bits (303), Expect = 4e-30
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = -1
Query: 258 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 79
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 78 CKRTVAGGAWVFSTTAASSCRSAVRR 1
C + AGGA+ +T +A + RS +RR
Sbjct: 85 CGKVKAGGAYTMNTASAVTVRSTIRR 110
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 124 bits (300), Expect = 9e-30
Identities = 54/83 (65%), Positives = 64/83 (77%)
Frame = -1
Query: 249 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 70
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 69 TVAGGAWVFSTTAASSCRSAVRR 1
AGGA+ +T +A + RS +RR
Sbjct: 93 VKAGGAYTMNTASAVTVRSTIRR 115
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 147 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 49
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 168 EVTQHAKYTCSFCGKDAM 115
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = -1
Query: 285 STFVSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 109
S + RF ++V K G Y L K AKYT G A R
Sbjct: 60 SDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDR 119
Query: 108 SCVGIWSCKRCKRTV 64
S G SCK ++ V
Sbjct: 120 SSAGAVSCKLREKNV 134
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 114 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 19
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 4.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 290 LCQLLYRRGLPKWP 249
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 284 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 165
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 132 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRR 1
C +KR+ G W C RC+ + + A +S R RR
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRR 101
>07_03_0039 - 12718972-12720699
Length = 575
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 41 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 193
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
>03_05_1144 + 30719953-30720456
Length = 167
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 72 RTVAGGAWVFSTTAASSCRSAVRR 1
R +GG W ++ +SSC S++RR
Sbjct: 144 RFYSGGFWRSPSSGSSSCASSLRR 167
>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
Length = 80
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -1
Query: 288 LSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 148
L ++ + + K + G+T + +RY LR+ ++K+EV K
Sbjct: 13 LEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 129 GKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAV 7
GKD + +CV ++ + + GG WV + C S +
Sbjct: 880 GKD--RTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTI 918
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,724,450
Number of Sequences: 37544
Number of extensions: 173185
Number of successful extensions: 455
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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