Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d12
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.61
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 31 1.4
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 31 1.4
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 31 1.4
Z68221-6|CAB97237.1| 583|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z68217-12|CAA92468.2| 583|Caenorhabditis elegans Hypothetical p... 28 7.5
Z34533-6|CAA84300.2| 371|Caenorhabditis elegans Hypothetical pr... 28 9.9
U97000-9|AAC47998.1| 345|Caenorhabditis elegans Seven tm recept... 28 9.9
AY158690-1|AAN41642.1| 371|Caenorhabditis elegans choline kinas... 28 9.9
AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical ... 28 9.9
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 31.9 bits (69), Expect = 0.61
Identities = 34/138 (24%), Positives = 53/138 (38%)
Frame = -3
Query: 678 YMEYASVAGPNYDDFDLIKQRVVPHTLCGAGSNDRNSVFGDKSGMDEPLNNWKPDTLYLN 499
Y+ ++A P Y L +Q + G N S +G + G ++P P T
Sbjct: 411 YIFVNTIANPGYHQISLKQQG--SYAFFVYGKNKLYS-YGYEGGANKPTVVLAPPTTPGP 467
Query: 498 LYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWDRRNPITWNELEYIGGNDSNLIPNPGDS 319
+ PV ++ PT + P+ T +N NP T +N I +P S
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTSKQTNTI-SPHLS 526
Query: 318 LCDNSLVYSIPVVIPYRS 265
S+V S P + P S
Sbjct: 527 TITGSIVTSTPTMAPQTS 544
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 171 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 266
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 171 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 266
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 171 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 266
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>Z68221-6|CAB97237.1| 583|Caenorhabditis elegans Hypothetical
protein F58G6.6 protein.
Length = 583
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 177 LDDECRYAQMAKVVRSQLQKHKLDARID 94
L +EC Y Q VR + K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543
>Z68217-12|CAA92468.2| 583|Caenorhabditis elegans Hypothetical
protein F58G6.6 protein.
Length = 583
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 177 LDDECRYAQMAKVVRSQLQKHKLDARID 94
L +EC Y Q VR + K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543
>Z34533-6|CAA84300.2| 371|Caenorhabditis elegans Hypothetical
protein B0285.8 protein.
Length = 371
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -3
Query: 801 NGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYD 640
+ D I D +VY KY A+D+ Q M + EY + G +Y+
Sbjct: 117 DSDCILDPEISRRVGAVYPKYHAIDVPVSKKRRCFQVMRESLKEYQDLGGGDYE 170
>U97000-9|AAC47998.1| 345|Caenorhabditis elegans Seven tm receptor
protein 135 protein.
Length = 345
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = -1
Query: 779 PRAAMLTNQSIINIELSI*NPGRPLPQRNTCFNSIWNTRLWPVLIMTILT*SNKGLCRTH 600
P M + ++ + SI N PL + TC + + + + +L + +CRTH
Sbjct: 67 PVGHMKGSMFVVFMHSSILNATNPLAEFLTCLHCVLSGFVASLLACQFIF-RYLAVCRTH 125
Query: 599 FAVPVQTIAILCLV 558
F V +Q I LCL+
Sbjct: 126 FLVHLQGIN-LCLL 138
>AY158690-1|AAN41642.1| 371|Caenorhabditis elegans choline kinase
CKB-1 protein.
Length = 371
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -3
Query: 801 NGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYD 640
+ D I D +VY KY A+D+ Q M + EY + G +Y+
Sbjct: 117 DSDCILDPEISRRVGAVYPKYHAIDVPVSKKRRCFQVMRESLKEYQDLGGGDYE 170
>AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical
protein T22E7.2 protein.
Length = 257
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 462 KNEHSSDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLN 587
K+EH KP + + + +S + R Y +T++C R N
Sbjct: 16 KSEHFVRKPYESEAGRHVITNSFCSICEVRTYRETKHCKRCN 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,831,484
Number of Sequences: 27780
Number of extensions: 506577
Number of successful extensions: 1193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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