Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d07
         (860 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   4.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.4  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   7.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.5  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 730 EERTKMXLKNVSWSLRKTDKSTPKSQRC 647
           + RT       S + R T ++TP S RC
Sbjct: 275 QRRTHTRHTTTSHNTRGTPRTTPASSRC 302


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 594  SHPRETTKKSVDKSRRHNINR 532
            SHP    +K  DK+  H  NR
Sbjct: 988  SHPLAALQKLCDKTETHTNNR 1008


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 540 YYVSLIYPHFFS 575
           YYV++ +PH F+
Sbjct: 500 YYVNVTFPHLFN 511


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 609 HQTPVSHPRETTKKSVDKSRRHNINRPTRLS 517
           HQ PV H + T    + +  R +   PT L+
Sbjct: 195 HQCPVCHKKFTNALVLQQHIRLHTGEPTDLT 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,471
Number of Sequences: 336
Number of extensions: 3373
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)