Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d07
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...   164   2e-41
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.4  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    27   4.5  

>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score =  164 bits (398), Expect = 2e-41
 Identities = 76/108 (70%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
 Frame = -1

Query: 695 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 516
           L + E+GQ YAQVTKMLGNGR+EA CFDG+KRL HIRGKLRKKVWINQGDIIL+ LR++Q
Sbjct: 26  LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQ 85

Query: 515 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE-DIEF 375
           D K DVILKYT DEAR LK  GE PET +INET  +  +G D+ D EF
Sbjct: 86  DEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEF 133


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +3

Query: 603 FDAIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFXFIFVLSSPPIFSSFTFVFRHVLYD 782
           FDA   H  +  +   LCD   L  V  +    F+  I+       FS   + F++ L+D
Sbjct: 418 FDAALTHRDRECLIHDLCDNDQLNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWD 477


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +3

Query: 660 LGVLLSVFLKDQLTFFXFIFVLSSPPIFSSFTFVFRHVLYDFYYK 794
           + + +  +  + + FF F F  S   +FS F+F+F  + ++F+++
Sbjct: 93  IAIFIHPYDSNVVPFFCFFFYFS---LFSFFSFLFTSLHFNFFFR 134


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 518 QDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGL 393
           ++ K++V ++YT D A      GE   ++   E V+YS+  L
Sbjct: 511 RNRKSNVKIEYTEDFATGFAISGEISHSINNLEFVLYSLSSL 552


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -2

Query: 733 GEERTKMXLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNACVTSEGNYEK 569
           G E+  +  +  +W    ++ S   S  CS+ A W   +L+++  CV + G  ++
Sbjct: 220 GGEKWNVAAECDAWQANNSELS---SSICSISANWSTLSLLSTEGCVYAFGRCDR 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,240
Number of Sequences: 5004
Number of extensions: 52287
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)