Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d06
         (888 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.79 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   2.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.6  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   7.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.4  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   7.4  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 615 FFSSCCLIAGSYLPVHST*GITSSK 689
           FFS CC++   YL    T  +T+SK
Sbjct: 12  FFSFCCILFFIYLYWQQTSNLTTSK 36


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 133 NPTVDWNNATDRLQSKRSKR 74
           NP V  ++ T+  +SKRSKR
Sbjct: 63  NPAVQGSSLTEGKRSKRSKR 82


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 112 CSNRR*D*AGYSPPQCWQRRCYVCAFGFP 198
           C ++  D A Y PP+   + C +   GFP
Sbjct: 432 CQDKLGDYACYCPPKHTGKNCEIYDRGFP 460


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 3   CIFYKYFILFSNCCA 47
           CI+Y Y++    CCA
Sbjct: 257 CIYYFYYMHLLFCCA 271


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 317 NDRFVGSRGSIPRGQAQT 264
           N R   SRG IPR + +T
Sbjct: 232 NSRRASSRGLIPRAKVKT 249


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +3

Query: 513 SCFLKSSSVFCATTACSAFVCSVNVAISLVTNCLFFSSCCLI 638
           +CF ++ +  C T  C    C  N+ +  V        CC I
Sbjct: 695 TCFCENGNNKCFTMECPQVTCPDNMKLEKVP-----GECCAI 731


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 541 KTEEL--FKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK 368
           KTE+L   +K++  E    I +   +A   +  +    + R+Y       + K+EMM   
Sbjct: 523 KTEDLDEIQKEKGDEYYETISN-HTDASSAKAVKNSDHITRIYACATMWHENKEEMMEFL 581

Query: 367 DELLQVKDTQVSNLIAK 317
             +L++ + Q +  +A+
Sbjct: 582 KSILRLDEDQSARRVAQ 598


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 541 KTEEL--FKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK 368
           KTE+L   +K++  E    I +   +A   +  +    + R+Y       + K+EMM   
Sbjct: 523 KTEDLDEIQKEKGDEYYETISN-HTDASSAKAVKNSDHITRIYACATMWHENKEEMMEFL 581

Query: 367 DELLQVKDTQVSNLIAK 317
             +L++ + Q +  +A+
Sbjct: 582 KSILRLDEDQSARRVAQ 598


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 541 KTEEL--FKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK 368
           KTE+L   +K++  E    I +   +A   +  +    + R+Y       + K+EMM   
Sbjct: 523 KTEDLDEIQKEKGDEYYETISN-HTDASSAKAVKNSDHITRIYACATMWHENKEEMMEFL 581

Query: 367 DELLQVKDTQVSNLIAK 317
             +L++ + Q +  +A+
Sbjct: 582 KSILRLDEDQSARRVAQ 598


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 541 KTEEL--FKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK 368
           KTE+L   +K++  E    I +   +A   +  +    + R+Y       + K+EMM   
Sbjct: 523 KTEDLDEIQKEKGDEYYETISN-HTDASSAKAVKNSDHITRIYACATMWHENKEEMMEFL 581

Query: 367 DELLQVKDTQVSNLIAK 317
             +L++ + Q +  +A+
Sbjct: 582 KSILRLDEDQSARRVAQ 598


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 362 LVFFVHHFIFSLHSFLKPGVHAVEV 436
           + F  H +IF + +F+   V A+EV
Sbjct: 153 ITFGWHTYIFDVPNFVNEYVQAIEV 177


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,572
Number of Sequences: 336
Number of extensions: 4456
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)