Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d06
         (888 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    31   0.062
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    31   0.062
AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.        24   7.1  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   7.1  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   9.4  

>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 30.7 bits (66), Expect = 0.062
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = -3

Query: 547 AQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQR-KDEMMHK 371
           A+  EE  +++E +ER+ A+   QIE ++ Q+   +  L + YTG +  ++  K E  + 
Sbjct: 670 AKLAEEAAERRERMERLEAMTTAQIEQENTQMINDLYRLLKKYTGLRNLIRELKSEYGNS 729

Query: 370 KDELLQVKDTQVSNLI 323
           K   +  + T + ++I
Sbjct: 730 KIYPIFPRYTMLKDMI 745


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 30.7 bits (66), Expect = 0.062
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = -3

Query: 547 AQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQR-KDEMMHK 371
           A+  EE  +++E +ER+ A+   QIE ++ Q+   +  L + YTG +  ++  K E  + 
Sbjct: 670 AKLAEEAAERRERMERLEAMTTAQIEQENTQMINDLYRLLKKYTGLRNLIRELKSEYGNS 729

Query: 370 KDELLQVKDTQVSNLI 323
           K   +  + T + ++I
Sbjct: 730 KIYPIFPRYTMLKDMI 745


>AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.
          Length = 133

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 438 PTSTACTPGFRKLCR 394
           P +TACT G ++ CR
Sbjct: 21  PKTTACTAGNKRCCR 35


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 651 LPVHST*GITSSKSHSCNSMAYGSL 725
           +PV S   ++++ S SC+S A GSL
Sbjct: 233 IPVSSCSPLSTASSASCSSSAAGSL 257


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 151  VENIRPNPTVDWNNATDRLQSKRSKRSISFDSLEEAQQFE 32
            +E+ R  P ++ N          ++ S    SLE+ QQF+
Sbjct: 960  LEDFRATPFIECNGGKGHCHYYETQTSFWLVSLEDHQQFQ 999


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 907,083
Number of Sequences: 2352
Number of extensions: 18055
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95507181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)