Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d05
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 161 5e-40
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 161 6e-40
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 31 1.4
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 31 1.4
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 31 1.4
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 29 4.4
Z93393-7|CAB07694.1| 383|Caenorhabditis elegans Hypothetical pr... 29 5.8
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 5.8
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 29 5.8
AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical ... 29 5.8
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 5.8
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 29 5.8
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 161 bits (392), Expect = 5e-40
Identities = 78/132 (59%), Positives = 98/132 (74%)
Frame = -3
Query: 401 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 222
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 221 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 42
K P T+E++MKKIED+NTLVFIV ANKHHIK AV LY++ KVNTLI P +KKAY
Sbjct: 68 KAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAY 127
Query: 41 VRLARDYDALDV 6
VRLA DYDALDV
Sbjct: 128 VRLASDYDALDV 139
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 161 bits (391), Expect = 6e-40
Identities = 78/130 (60%), Positives = 98/130 (75%)
Frame = -3
Query: 395 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 216
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS PK ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 215 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVR 36
PLT+E+AMKKIE++NTLVFIV ANK+ IK AV KLY++ KVNTLI P +KKAYVR
Sbjct: 71 PLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVR 130
Query: 35 LARDYDALDV 6
L DYDALDV
Sbjct: 131 LTADYDALDV 140
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -3
Query: 371 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 195
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 194 MKKIEDNNTLVFIVH 150
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -3
Query: 371 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 195
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 194 MKKIEDNNTLVFIVH 150
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -3
Query: 371 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 195
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 194 MKKIEDNNTLVFIVH 150
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -3
Query: 371 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 195
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 194 MKKIEDNNTLVFIVH 150
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 323 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 192
+ FRR + RH R+++P ++ I KFP SE A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
>Z93393-7|CAB07694.1| 383|Caenorhabditis elegans Hypothetical
protein Y48E1B.8 protein.
Length = 383
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 58 PSGLMSVLTLATFIS*SFLTAALIWCLFALV*TIKTKVLLSSIFFIAASDVRGNLMML*A 237
P+GL S+L L F S + W L L+ K++ L ++ ++ A +L L
Sbjct: 4 PAGLQSLLALIFFNRLSLVIFYSFWFLIGLLVLRKSQNALEAVRYVKAHSASVSLDSLEG 63
Query: 238 SMRF--LLGRDF 267
S F LL DF
Sbjct: 64 STEFRQLLEEDF 75
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 342 YSLPMFTFYNLPLSLKCFSNRFHYFF 419
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -3
Query: 269 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 105
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758
>AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical
protein T01A4.1b protein.
Length = 637
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -3
Query: 269 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 105
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 79 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 131
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -3
Query: 269 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 105
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 647 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 699
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -3
Query: 269 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 105
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -3
Query: 317 FRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 138
F P E RHP R+ P+R + +K LT A+ + V +AN
Sbjct: 190 FAHPPDLE--RHPLSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAPPTEPVAARTATAN 247
Query: 137 KHHIKAAVKKL 105
+ HIK ++L
Sbjct: 248 QRHIKLFEEEL 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,720
Number of Sequences: 27780
Number of extensions: 241813
Number of successful extensions: 867
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -